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7 protocols using coomassie blue r 250

1

MMP Zymography for Gelatinase Activity

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Matrix metalloproteinase (MMP) zymography was performed according to a standard procedure, with the modification that 8% SDS gels (Amresco) containing gelatin (0.01 mg/mL) were used. The SDS in the gels was removed by incubating the gels twice (30 minutes each) in 200 mL of 2.5% Triton X-100 at 4°C. Thereafter, the gel slabs were incubated at 37°C overnight in an incubation buffer (50mM Tris-HCl [pH 8.0], 5 mM CaCl2, 0.02% NaN3). The gels were then fixed and stained by immersion for 1 hour in 0.05% Coomassie Blue R-250 (Amresco). Molecular weight-marker proteins were visible as stained bands against the lighter blue stained gelatin background. Gelatinase activity was detected as clear zones (negative staining) against the blue background.
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2

Zymographic Analysis of MMP-2 and MMP-9

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The enzymatic activity of MMP-2 and MMP-9 was measured by gelatin zymography. Conditioned culture medium was harvested and centrifuged. The supernatant was mixed with 5× SDS loading buffer and subjected to SDS-PAGE containing 0.1% (w/v) gelatin in the gel. Thereafter, the gel was washed twice in 2.5% (w/v) Triton X-100 solution with shaking for a total of 80 min, and incubated in the incubation solution (50 mM Tris-HCl, pH 7.6, 5 mM CaCl2, 1 μM ZnCl2, 0.2 M NaCl) for 40 h at 37°C. The gel was then stained for 3 h with 0.05% Coomassie Blue R-250 (Amresco, Solon, OH, USA) in 30% methanol and 10% acetic acid, and distained in a series of graded methanol and acetic acid solutions until clear proteolytic bands appeared. The gel was imaged with WD-9413BN Gel Documentation & Analysis System (LIUYI, Beijing, China). Areas of proteolysis were visualized by the absence of staining in the gel and were quantified by densitometric analysis.
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3

Hydrogel Protein Composition Analysis

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The HLCS hydrogel was immersed in ultrapure water for 24 h to provide the water extract. The water extract was diluted to the appropriate concentration. Then, HLC solution (0.1%), BSA solution (0.1%), and TGase solution (0.1%) were prepared. After the preparation of the sample, sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was performed using the Laemmli method, then the gel being removed and stained with Coomassie Blue R-250 (Amresco, Solon, OH, USA) for about 30 min. Finally, we observed the experimental results after decolorization of the gel.
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4

Gelatin Zymography for MMP-2 and MMP-9 Analysis

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gelatin zymography was performed in order to determine the activity of MMP-2 and MMP-9. Briefly, the protein samples (40 µg) were separated by 10% SDS-PAGE containing 1 mg/ml gelatin (Sigma-Aldrich) at 4°C. Following electrophoresis, the gel was incubated with 2.5% Triton X-10 0 (Amresco LLC) in distilled water with gentle agitation for 40 min at room temperature. Subsequently, the gel was further incubated in developing buffer (50 mM Tris-HCl, 0.2 M NaCl, 5 mM CaCl2, 1 µM ZnCl2 and 0.02% Brij35) overnight with gentle agitation. The gel was then stained with Coomassie blue R-250 (Amresco LLC) for 30 min. Following incubation with the staining solution, the gel was washed with a destaining solution (2.5% Triton X-100, 50 mmol/l Tris-HCl, 5 mmol/l CaCl2, 1 µmol/l ZnCl2; pH 7.6) until the bands became visible against the blue background. The incubation time was optimized depending on the enzyme activity. The quantitative analysis of the gelatin zymography was carried out using the Gel Documentation & Analysis system (Beijing Liuyi Instrument Factory, Beijing, China).
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5

Protein Separation and Immunodetection

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TSP or purified proteins were separated using 10–12.5% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) under the reducing condition, and the proteins on the gels were either stained with 0.25% Coomassie blue R-250 (AMRESCO, cat. no: 6104-59-2, Zottegem, Belgium) solution or analyzed by Western blotting using mouse anti-His (Qiagen, Valenica, CA, USA), mouse anti-LIF (abcam, cat. no., ab34427, Cambridge, UK), mouse anti-GFP (Clontech, cat. No., 632381, CA, USA), rat anti-HA (Roche, cat. No., 1583 816, Basel, Switzerland), mouse anti-IL6 (abcam, cat. no., ab9324, Cambridge, UK), and anti-CBD (Bioapp, Pohang, Korea) antibodies. The horseradish peroxidase (HRP)-conjugated sheep anti-mouse IgG (Bethyl, cat. no., A90-146P, TX, USA), and goat anti-rat IgG (Bethyl, cat. no., A110-105P, TX, USA) were used as secondary antibody. Bands on the immunoblots were detected using chemiluminescence detection reagents (GE healthcare, Illinois, USA), and images were captured with a LAS 4000 image capture system (Fujifilm, Tokyo, Japan).
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6

Comprehensive Protein Quantification Protocol

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Unless otherwise specified, all reagents were purchased from Millipore-Sigma (Oakville, ON, Canada). The BCA protein assay reagent (bicinchoninic acid), NuPAGE® 4–12% Bis-Tris gels, NuPAGE® MES SDS running buffer, NuPAGE® sample reducing agent, NuPAGE® antioxidant, NuPAGE® LDS sample buffer, prestained protein standard, methanol, sodium chloride, and Corning clear polystyrene 96-well microplates were purchased from ThermoFisher Scientific (Nepean, ON). Glacial acetic acid, glycerol, sodium phosphate dibasic, and trizma base were from Bioshop Canada (Burlington, ON, Canada). Bromophenol blue, Coomassie blue R250, potassium chloride, potassium phosphate monobasic, and sodium dodecyl sulfate were from VWR (Mississauga, ON, Canada). Petri dishes (150 mm) were purchased from Ultident Scientific (St. Laurent, QC, Canada).
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7

TTR Fragment Identification via SDS-PAGE

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Plasmin-digested TTR V30M samples (15 μg) were loaded into a 15% polyacrylamide SDS-PAGE gel. Samples were then transferred onto a PVDF membrane (Bio-Rad, Hercules, CA, USA) and proteins were further stained with Coomassie blue R-250 (VWR International, Radnor, PA, USA). Membranes were allowed to dry and the bands below to the TTR monomer, corresponding to TTR fragments (band 1 and band 2) were excised for N-terminal sequencing analysis (Edman degradation method) using an ABI Procise Protein Sequencer, an ABI Microgradient Pump System, and an ABI Programmable Absorbance Detector (Applied Biosystems Inc., Waltham, MA, USA).
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