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12 protocols using shim pack clc ods

1

Photocatalytic Degradation of 2-Naphthol

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Au–Ag@AgBr (20 mg) was added to an aqueous solution of 2-naphthol (10 µM, 20 mL) with 1% acetonitrile. Acetonitrile with a wide potential window was added for complete dissolution of 2-naphthol. The suspension was stirred in the dark for 30 min, and then, illumination was carried out by using a 300 W Xe lamp (HX-500, Wacom) with a cut off filter L-42 (λ > 400 nm, AGC TECHNO GLASS) in a double jacket type reaction cell. The cell was kept at 25 °C by circulating thermostated water through an outer jacket around the cell. The light intensity (I420–485) was adjusted to 4.0 mW cm−2 using an actinometer sensitive to the wavelength range from 420 to 485 nm. The 2-naphthol concentration was determined by high-performance liquid chromatography (Prominence, Shimadzu) [measurement conditions: λ = 223 nm; Shim-pack CLC-ODS (ϕ 4.6 mm × 150 mm) (Shimadzu); mobile phase H2O : MeOH = 3 : 7; flow rate = 1 mL min−1;]. The amount of CO2 generated was measured by gas chromatography (GC-2014, C-R8A with methanizer MTN-1 (Shimadzu)) [measurement conditions: N2 flow rate = 50 mL min−1; column = Porapak-Q 80–100 (GL science)].
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2

Extraction and Characterization of Antibacterial Compound

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Crude antibacterial compound was extracted from the cell-free culture broth of strain JAJ13 using an equal volume of ethyl acetate. The antibacterial compound was partially purified using silica column chromatography with gradient solvent system (hexane: ethyl acetate). Fractions were analyzed on TLC and tested for antibacterial activity by disc diffusion method as described in a following section. A fraction showed antibacterial activity was analyzed on HPLC instrument (Shimadzu, Japan), using shim-pack CLC ODS (4.6 × 15 mm) column, and a 350 nm detector. Methanol and water (65:35, v/v) were adopted as a mobile phase with a flow rate of 1.0 ml/min at 25°C. Filtered sample was injected into the column and the relative retention time was recorded.
The partially purified antibiotic was further analyzed using a LC-MS instrument (Waters, Germany) consisting of Alliance separations module e2695; ACQUITY QDa detector, and a C18 reversed-phase column. Solvent A consisted of 0.01% (v/v) formic acid in water. Solvent B consisted of 0.01% (v/v) formic acid in acetonitrile. The mass spectrometer was operated in the positive-full-scan (m/z 150–700) mode.
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3

Polyphenolic Profile Analysis of OFIEOH Extract

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LC-MS/ESI was used to characterize the polyphenolic profile of the OFIEOH extract. The analysis was conducted using an Agilent 1200 series coupled with a triple quadrupole MS series 6400 (Santa Clara, CA, USA). Separation was performed using a C18 reverse-phase column (150 × 2.1 mm, 5 μm) Shim-Pack CLC-ODS (Shimadzu, Kyoto, Japan) at 25 °C. The mobile phase for the HPLC was prepared with acetonitrile (99.98% purity) from J.T. Baker (Xalostoc, Mexico), and Merck’s formic acid (≥99%). The mobile phase consisted of 0.5% formic acid in water (solvent A) and 0.5% formic acid in acetonitrile (solvent B) using the following gradients: 0–10 min: 10% B; 10–20 min: 10–30% B; 20–30 min: 30–50% B; 30–32 min: 50% B; 32–38 min: 50–10% B; 38–48 min: 10% B [19 (link)]. The flow rate was 1.0 mL/min and the injection volume was 5 μL. Before the analysis with LC-MS/ESI, 1 mg/mL of OFIEOH extract was eluted through the C18 cartridges (Varian, Palo Alto, CA, USA) to remove low-molecular-weight compounds. The parameters for ESI were as follows: nebulizer at 50 psi, 4500 V, arrest gas (N2) flow at 11 L/min, and an ionization temperature of 350 °C. The ion trap mass spectrometer was operated in a negative ion mode with a full scanning range from m/z 150 to m/z 1000.
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4

HPLC Analysis of Metabolites

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The HPLC analysis was carried out with a modified C18 column 250 mm × 4.6 mm × 5 µm (Shim-pack CLCODS, Shimadzu, Canby, Oregon). The solvents used were (A) water acidified with 5% formic acid and (B) methanol HPLC grade. The elution gradient established was 15% B for 5 min, 15 to 80% B in 25 min, and maintaining 80% B isocratic for 15 min to rebalance the column, using a flow rate of 1.0 mL/min. The mass detection was performed in a positive mode with a capillary voltage of 2500 V; end plate offset: 2000 V; capillary output 110 V, skimmer 1 20 V, skimmer 2 10 V, dry gas (N2) temperature 325 °C and flow 11 L/min, nebulizer 60 psi, sweep range from 200 to 800 m/z temperature set at 25 °C. Dual online DAD detection was performed using 280 and 520 nm as the wavelengths of choice.
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5

Purification and Sialic Acid Analysis of Recombinant Erythropoietin

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5.0 × 106 of EC2-1H9 cells or the engineered cells were seeded in T175 culture flask containing MEM-α supplemented with 10% (v/v) dFBS, 3.5 g/L glucose, 1% (v/v) Ab-Am solution, and 20 nM MTX. The culture medium was replaced with serum-free medium (CHO-S-SFM II; Gibco) in 3 days. After 2 days, the culture medium was collected, filtered using 0.45 μm filter (Sartorius, Göttingen, Germany), and dialyzed against phosphate buffer saline (PBS, pH 7.4) at 4 °C, overnight. To purify rhEPO, cultured medium was subjected to EPO Purification Gel (MAIIA Diagnostics, Uppsala, Sweden) according to the manufacturer’s instructions. Purified rhEPO was dialyzed against distilled water at 4 °C, overnight. The concentration was measured using a Quant-iT™ protein assay kit (Invitrogen) and stored at −80 °C until use.
The sialic acid level of the purified rhEPO was examined using the OPD-labeling method as previously described26 (link). Briefly, sialic acid moieties from the purified rhEPO were released using 0.5 M NaHSO4 at 80 °C for 20 min. Released sialic acid was labeled with OPD (o-phenylenediamine-2HCl; Sigma) at 80 °C for 40 min. The level of OPD-labeled sialic acid was determined using C18 reversed-phase column (Shim-pack CLC-ODS; Shimadzu, Kyoto, Japan) with 474 scanning fluorescence detector (excitation at 230 nm and emission at 420 nm, Waters).
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6

Hydrolysis and HPLC Analysis of Phenolic Compounds

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Hydrolysis of En crude extract was performed in Central Hi-Tech Laboratory, University of Agriculture, Faisalabad, Pakistan, as described previously by Pak-Dek et al.35 A 50 mg of each extract was dissolved in 24-mL methanol and was homogenized. Distilled water of 16 mL was added, followed by 10 mL of 6 M HCl. Mixture was then thermostated for 2 hours at 95 °C. The final solution was filtered using 0.45-µm nylon membrane filter (Biotech) prior to high-performance liquid chromatography (HPLC) analysis. Separation of plant sample on gradient HPLC (LC-10A, SHIMADZU) was performed using shim-pack CLC-ODS (C118), 25 cm × 4.6 mm, 5-µm column. Chromatographic separation was carried out using a mobile phase gradient: A (H2O: acetic acid-94:6, pH = 2.27), B (acetonitrile 100%). The gradient used was 15% solvent B (0-15 minutes), 45% solvent B (15-30 minutes), and 100% solvent B (35-45 minutes) with 1 mL/min flow rate. Ultraviolet (UV)–Visible detector (λ max 280 nm) was used for separation of phenolic compounds. Identification of phenolic compounds was established by comparing the retention time and UV-Visible spectra of the peaks with those previously obtained by injection of standards. Quantification was performed by external calibration.
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7

Fingerprint Analysis of Propolis Extract

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The green propolis extract employed was produced and kindly provided by the Apis Flora Company (Ribeirão Preto, Brazil; Patent no. PI 0405483-0, published in Revista de Propriedade Industrial n. 1778, Jan 2, 2005). The ethanol extract of propolis employed (EPP-AF) has a shelf life of four and a half years under stable conditions.
The propolis extract was analyzed in a high-performance liquid chromatography system (i-Series Plus; Shimadzu, Kyoto, Japan) equipped with a system controller, a quaternary pump, and a diode-array detector. The data were analyzed with LC solution software, version 1.21 SP1 (Shimadzu). As can be seen in Fig. 1, we used a 4.6 mm × 250 mm column with a particle diameter of 5 µm and a pore diameter of 100 Å (Shim-Pack CLC-ODS; Shimadzu).

Fingerprint analysis of the ethanol extract of propolis. Chromatograms were plotted at 275 nm with reverse-phase high-performance liquid chromatography on a C18 column (4.6 mm × 250 mm; particle diameter, 5 µm; pore diameter, 100 Å) and gradient elution with methanol and acidic water (pH 2.7). The chromatographic profile includes the following compounds: (1) caffeic acid phenethyl ester (in approximately 15 min); (2) p-coumaric acid (in approximately 20 min); (3) trans-Cinnamic acid (in 35–36 min); (4) aromadendrin (in 38 min); and (5) artepillin C (in 61–62 min).

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8

Optimized Antibacterial Metabolite Production

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The statistical model and the optimization were experimentally validated by culturing the strain JAJ13 under unoptimized and optimized levels of variables at 28 ± 2°C for 10 days. After the incubation, the antibacterial substance was extracted with equal volume of ethyl acetate and the top organic layer was dried for further analysis. The dried ethyl acetate extracts were resuspended in methanol and assayed as above for antibacterial activity. In order to compare the secondary metabolite profile of strain JAJ13 on unoptimized and optimized medium, the resuspended fractions were also analyzed in HPLC (Shimadzu) over a shim-pack CLC ODS (4.6 × 15 mm) column with liquid pump-LC-6AD, system controller-SCL-6B, UV–Vis detector (195–700 nm)-SPD-6AV, data processor-CR-5A, mobile phase - Methanol: Milli Q water (65:35) flow rate−1 ml min−1 and wavelength–350 nm.
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9

Chemotaxonomic Analysis of Strain AJ110941

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Chemotaxonomic analyses of strain AJ110941P were performed according to the previously described methods33 (link). Briefly, the genomic DNA G + C content and major respiratory quinones were analyzed using LC10 HPLC system with a Shim-pack CLC-ODS (Shimadzu) and Zorbax SB-C18 (Agilent Technologies Palo Alto, CA, USA), respectively. Cellular fatty acid compositions were determined using a GCMS-QP2010 system (Shimadzu).
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10

HPLC-PDA Analysis of Compounds

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We modified a previous method,11 (link),12 (link) and used an HPLC system
equipped with a PDA (Shimadzu Corporation, Kyoto, Japan) to record ultraviolet
spectra from 200 to 400 nm. The column was a Shim-pack CLC-ODS (4.6 mm × 150 mm;
Shimadzu GLC Ltd., Tokyo, Japan), which was maintained at 40°C. Mobile phase A
was 20 mM ammonium formate-0.2% formic acid (1:1, v/v), and mobile phase B was
acetonitrile. The gradient conditions were 80% A and 20% B (0 min), 50% A and
50% B (20–25 min), and 80% A and 20% B (28–40 min). The flow rate was
1.0 mL/min, and the injection volume was 20 μL.
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