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37 protocols using minicollect

1

Biological Specimen Collection for Polytrauma

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Animals were euthanized at 6 h and 24 h following polytrauma or sham procedure by cardiac puncture under general anesthesia. Blood samples were collected in K2EDTA phlebotomy tubes (MiniCollect, Greiner Bio One) and immediately processed by two-step centrifugation, at 1,000g and 10,000g for 10min at 4°C to obtain a cell-free plasma aliquot, which was stored at a −80°C freezer until further analysis. Tissues, thoracic, and abdominal organ samples were collected sterilely and rinsed in cold PBS. Samples were immediately snap frozen in liquid nitrogen and stored at −80°C until further analysis.
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2

Biospecimen Processing for RNA Extraction

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As previously described20 , blood was collected and placed in MiniCollect ethylenediaminetetraacetic acid (EDTA) tubes or serum tubes (Greiner Bio One, Monroe, NC). Immediately following sampling, 100 μl of blood was added to 600 μl of AVL viral lysis buffer with carrier RNA (Qiagen) for RNA extraction. For tissue sample processing, approximately 100 mg was stored in 1 ml RNAlater (Qiagen) for 96 hours to stabilize RNA. RNAlater was completely removed, and tissues were homogenized in 600 μl RLT buffer (Qiagen) in a 2-ml cryovial using a tissue lyser (Qiagen) and 1.4 mm ceramic beads (Precellys; Bertin Corp., Saint-Quentin-en-Yvelines Cedex, France). The tissues sampled included right lung upper lobe, right lung middle lobe, right lung lower lobe, left lung upper lobe, left lung middle lobe, left lung lower lobe, liver, spleen, kidney, adrenal gland, pancreas, and brain (frontal cortex). All blood samples were inactivated in AVL viral lysis buffer with carrier RNA, and tissue samples were homogenized and inactivated in RLT buffer prior to removal from the BSL-4 laboratory. Subsequently, RNA was isolated from blood using the QIAamp viral RNA kit (Qiagen), from tissues using the RNeasy minikit (Qiagen) according to the manufacturer’s instructions supplied with each kit.
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3

Neonatal and Adult Thyroid Hormone Assays

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Neonatal blood samples were collected regardless of the time in the day or fasting state by heel prick in micro tubes (0.5 mL MiniCollect, Greiner Bio-One GmbH, Kremsmünster, Austria). Other blood samples were collected in fasting state from 7.00 to 10.00 am by venipuncture in test tubes with clot activator (2 or 4 mL Vacuette, Greiner Bio-One GmbH, Kremsmünster, Austria). After clotting, blood samples were centrifuged at 2200 RCF for 10 minutes.
Fresh serum samples were firstly analysed for TPO-Ab and TG-Ab. If antibodies tested negative, samples were further analysed for TSH, TT3, TT4, FT3 and FT4. Neonatal samples were tested for all hormones irrespective of the antibodies test results. Due to limited volume, not all hormones were measured in each individual sample. All measurements were performed on the Abbott Architect i2000 chemiluminescent microparticle immunoassay (Abbott Diagnostics, Abbott Park, USA). Assay precision was evaluated according to CLSI EP15-A2 guidelines using two levels of quality controls measured in triplicate for five consecutive days (Table 1) (21 ). Prior to analysis, authorized personnel verified calibrations and quality controls.
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4

Peripheral Blood Sampling and Analysis

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Peripheral blood samples were obtained by retro-orbital (RO) bleeding and stored in Greiner MiniCollect EDTA tubes containing K3EDTA (Catalog #450475). Complete blood cell counts were assayed using a Hemavet 950 instrument (Drew Scientific).
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5

Specimen Collection and Processing for Viral Analysis

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Swabs and feces were collected in virus transport media (500 μl) (Munster et al., 2009 (link)). Blood samples were collected in blood collection tubes (Minicollect, Greiner Bio-one, 450533, The Netherlands), centrifuged for 10 min at 250 x g and the serum was stored at -20 °C. All organs collected during necropsy were snap frozen and stored at -80 °C. Organs and tumor tissues were supplemented with Dulbecco’s Modified Eagle’s Medium (DMEM, Lonza, The Netherlands) and PSG and subsequently homogenized using a FastPrep 24 tissue homogenizer (MP Biomedicals, The Netherlands). Homogenized samples were centrifuged for 10 min at 2000 x g and supernatant was stored at -80 °C or 200 μl was used for Ribonucleic acid (RNA) isolation.
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6

Mouse Leukocyte Isolation Protocol

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Blood was collected into EDTA-coated tubes (MiniCollect, Greiner Bio-One) from euthanized mice using cardiac puncture. Red blood cells were then lysed using blood lysis buffer (BD Biosciences), and the remaining leukocytes were washed twice and counted.
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7

Self-collected Capillary Blood Sera Protocol

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Using a collection kit distributed by the researchers (Supplementary Figure S1a), participants collected 1–5 drops (approximately 30–150 µL) of capillary blood by self-finger prick with a safety lancet in a Greiner Bio-One MiniCollect serum separation tube (see Supplementary Video). Sera were separated by centrifugation at 5000×g for 5 min at 4 °C under biosafety level 2 (BSL2) conditions and heat-inactivated in a water bath at 56 °C for 1 h. Heat-inactivated samples were stored at 4 °C until use for ELISA. After scanning tube barcodes for each plate into a CSV file with a hand-held scanner, serum was transferred into barcoded 96-well plates by manual pipetting.
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8

Submandibular Bleeding and PBS Injection

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Blood samples were collected from the animals by submandibular bleeding. For 12 days, every 3 days, a sample of 100 µL was collected into K2-EDTA-coated tubes via a blood collection funnel (Greiner Bio-One Minicollect). Following blood collection, 100 µL PBS was injected subcutaneously in each animal.
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9

Blood Collection and Hematology Analysis

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Two hundred and fifty microliters of blood was collected into EDTA tubes (MiniCollect, Greiner Bio-One, Kresmünster, Austria), tubes were rotated to prevent blood clotting and kept at 4 °C. Hematology analysis was performed by AML laboratories (Herzliya, Israel).
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10

Single Cell Isolation for Flow Cytometry

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Isolation of single cell suspension for flow cytometry analysis was performed as previously described.7 (link) Briefly, animals were deeply anesthetized by IP injections of an overdose chloralhydrate followed by transcardial perfusion with ice-cold PBS and removal of spleens and brains. Blood specimens were collected with EDTA-coated capillaries (Radiometer, Denmark) by snipping the right atrium of the heart immediately before perfusion via the left ventricle. Blood samples were transferred into EDTA-coated collection tubes (Minicollect, Greiner Bio One, Germany) until further processing. Details on cell isolation, antibody staining, flow cytometry, and cell sorting are provided in the Supplemental Methods and Table S2. Suppressive activity of Tregs was analyzed in T cell proliferation assays and by assessment of their impact on myeloid cell activation as described in the Supplemental Methods.
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