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6 protocols using ghost red

1

Evaluating PRL-Mediated B-Cell Responses

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WEHI-231 cells (PRL receptor+) and immature B-cells from MRL/lpr mice were incubated with PRL (50 ng/mL) for 1 hour before stimulating the cells with anti-IgM F(ab′)2 (10 μg/mL) for 48 hours and 18 hours, respectively. Cells cultured with medium, PRL, or anti-IgM F(ab′)2 were used as controls. The cells were washed with PBS and incubated with Ghost-Red (Tonbo Biosciences, California, USA) for 30 minutes at 4°C; Ghost-Red was used to measure viability (live cells do not stain and remain Ghost-Red). Data were acquired using a MACSQuant Analyzer 10 cytometer (Miltenyi Biotec) and analyzed with FlowJo software (Tree Star, Ashland, OR, USA).
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2

Profiling Lung ILC2 Phenotype and Function

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For BAL fluid collected, leukocyte populations were gated as previously described (33 (link)). Single cell suspensions of lung cells were stained for ILC2 as Live CD45+ Lineage Thy1-2+ CD127+ ST2+. For cytokine detection cells were stimulated for 4 h with PMA Ionomycin and Brefeldin A (cell stimulation cocktail, Biolegend) or BrefeldinA alone. After 15 min of viability stain with GhostRED (Tonbo, San Diego CA), cell fixation and intracellular cytokine staining was performed according to manufacturer instructions (BD biosciences San Jose CA) using IL-5-BV421, IL-13-APC, IL-17a-PeCy7 (Biologend, San Diego CA). For Transcription factor staining, FOXP3 fixation permeabilization kit was used according to manufacture and stained with GATA3-PECy7, ki67-e450, and IRF4-PE (eBioscience San Diego, CA). For mitochondrial analysis, ILC2 cultured with 20 nM MitoTrackerGreen and 100 nM MitoTrackercmxROS-H2 or 5 uM mitoSOX (Invitrogen, Carlsbad CA) in PBS with GhostRED dye for 30 min at 37°C 5% CO2. Cells were acquired on BD Canto II and analyzed with FlowJo software (Treestar Ashland OR).
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3

Regulation of Clonal Deletion in B Cells

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WEHI-231 cells and immature B cells from 9-week-old mice were preincubated for 30 min with G129R (PRL-inh), GSK, or Stattic and incubated with PRL for 1 h before stimulating them with anti-IgM F(ab)2 (10 μg/mL) to induce clonal deletion or apoptosis for 48 h (WEHI-231) or 18 h (murine B cells). Cells were washed with PBS and incubated with Ghost-Red (Tonbo Biosciences, San Diego, CA, USA) at 4 °C for 30 min. For caspase-3 staining, the cells were permeabilized with Cytofix or Cytoperm (BD Biosciences) at 4 °C for 1 h, washed with Perm/wash, and incubated with anti-caspase-3-FITC at 4 °C for 1 h. Data were acquired using a MACSQuant Analyzer 10 cytometer and analyzed with FlowJo software. Cells cultured in a medium without inhibitors and anti-IgM F(ab)2 were used to compare PRL-induced apoptosis.
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4

Apoptosis Assays in B-Cell Lines

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WEHI-231 cells (PRL receptor+) and immature B-cells from MRL/lpr mice were incubated with PRL (50 ng/mL) for 1 hour before stimulating the cells with anti-IgM F(ab′)2 (10 μg/mL) for 48 hours and 18 hours, respectively. Cells cultured with medium, PRL, or anti-IgM F(ab′)2 were used as controls. The cells were washed with PBS and incubated with Ghost-Red (Tonbo Biosciences) for 30 minutes at 4°C. The Annexin V assay was performed following the manufacturer's instructions (BD Biosciences). For the caspase-3 assay, the cells were permeated with Cytofix/Cytoperm (BD Biosciences) for 1 hour at 4°C, and the cells were then washed with Perm/wash (BD Biosciences) and incubated with anti-caspase-3-FITC for 1 hour at 4°C. Data were acquired using a MACSQuant Analyzer 10 cytometer (Miltenyi Biotec) and analyzed with FlowJo software (Tree Star, Ashland, OR, USA).
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5

T Cell Activation and Cytokine Analysis

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All cells were labeled with the viability dye Ghost Red (Tonbo Bioscience, USA). The antibodies used for cell culture were as follows: anti-CD3 (clone 145-2C11) and anti-CD28 (clone 37.51) from Invitrogen, USA; anti-IFN-γ (clone XMG12) and anti-IL4 (clone 11B11) from BioLegend, USA; anti-TGFβ from Peprotech, USA; cytokines IL6 and IL21 from Miltenyi Biotec, Germany. The antibodies used for staining were as follows: anti-mouse PRL receptor APC (clone T6, Novus Biologicals, USA); anti-CD4 PECy5 (clone GK1.5), anti-Ki-67 Alexa 488 (clone 16A8), anti-IL21 biotin (clone 7H20-I19-M3), and PE-conjugated streptavidin from BioLegend, USA; anti-CD44 PECy5 (clone IM7), anti-CD62L PE, (clone MEL-14), anti-BCL6 PE (clone BCL-DWN), anti-CXCR5 PECy7 (clone SPRCL5), and anti-PD1 APC (clone J43) from eBioscience, Invitrogen, USA; anti-ICOS VioGreen (clone 7E.17G9), anti-OX40 PE (clone REA625), and anti-AKT PE (clone REA677) from Miltenyi Biotec, Germany; and anti-STAT1 PE (clone A15158B), anti-STAT3 PE (clone 13A3-1), and anti-STAT5 PE (clone SRBC2X) from BioLegend.
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6

Macrophage Phenotypic Analysis after LPS Stimulation

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After LPS stimulation for 0, 4 or 24 h as described above, macrophages were harvested after removal of supernatant and washing with PBS. For flow cytometry, cells were stained with viability dye (Ghost UV450 or Ghost Red710 Tonbo Bioscience, San Diego) using an intracellular staining protocol (IC fixation and permeabilization staining kit, eBioscience). Antibodies included iNOS (CXNFT, eBioscience catalogue no. 12-5920), CD11b (M1/70, eBioscience catalogue no. 25-0112), F4/80 (BM8, eBioscience catalogue no. 48-4801), Arginase-1 (polyclonal, R&D Systems catalogue no. IC5868F). All antibodies were used as 1:200 dilution. Macrophages were analysed by flow cytometry on an LSRII instrument using FACS Diva software (BD Bioscience) and analysed using FlowJo software (Tree Star, San Carlos, CA). The cytometric bead array (BD Bioscience) was used to determine cytokine concentrations in macrophage supernatant after LPS treatment according to manufacturers’ instructions.
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