The largest database of trusted experimental protocols

7 protocols using 2 3 4 5 6 pentafluorobenzyl bromide

1

Comprehensive Fatty Acid Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Methyl tert-butyl ether (MTBE), methanol, chloroform, butanol, heptane, ethyl acetate, sodium chloride, acetic acid, acetone, myristic-d27 acid, Supelco 37-FAME mix potassium hydroxide, hydrochloric acid, hexane, N,N-diisopropylethylamine, 2,3,4,5,6-pentafluorobenzyl bromide and acetonitrile were purchased from Sigma Aldrich. The free fatty acid standard containing 52 fatty acids from C4 to C24 was purchased (Nu-Check Prep, Inc., Waterville, MN, USA). Deionised water (18.2 MΩ) was produced using a Milli-Q™ (Merck KGaA, Darmstadt Germany) system throughout. Glass tubes, 15 mL (Kimble), with Teflon lids and glass Pasteur pipettes were used for extractions; all glassware was rinsed with LC-MS-grade methanol before being heated at 400 °C for 4 h prior to use. A positive displacement pipette with glass tip (BRAND®, Wertheim, Germany) was used for accurate pipetting. Pre-packed silica-based solid-phase extraction cartridges were used (500 mg, 6 mL SampliQ™, Agilent Technologies, Mulgrave, Australia).
+ Open protocol
+ Expand
2

Quantification of Glutathione Metabolites

Check if the same lab product or an alternative is used in the 5 most similar protocols
GSH, GSSG, γ-Glu-Cys, Cys-Gly, 5-oxo-proline, Glu and the other amino acids used in the study, CH3OH, CD3OD (99.8 atom % 2H), acetone, pentafluoropropionic anhydride, 2,3,4,5,6-pentafluorobenzyl bromide, ophthalmic acid (γ-glutamyl-α-amino-n-butyryl-glycine) and borax (for the preparation of borate buffer) were purchased from Sigma-Aldrich (Steinheim, Germany). Hydrochloric acid (ultrapure, 37%) was from AppliChem (Darmstadt, Germany). Stock solutions were prepared in, and diluted with, deionized water, as appropriate. Glassware for GC-MS (1.8-mL autosampler vials and 0.2-mL microvials) were purchased from Macherey-Nagel (Düren, Germany).
Safety Considerations. PFPA is corrosive and malodorous. PFB-Br is corrosive and a lachrymator. Inhalation and contact with skin and eyes should be avoided. All work should be, and was, performed in a well-ventilated fume hood.
+ Open protocol
+ Expand
3

GC-MS Assay for NO Metabolites

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma concentrations of NO metabolites (NO2 and NO3), were analysed using previously described methods (Qadir et al., 2013 ). Spiking solution was prepared from 5 mM sodium nitrate-15N and 0.05 mM sodium nitrite-15N (Cambridge Isotope Laboratories, Inc. Andover, MA, USA) and used as an internal standard. One-hundred microliters of plasma/sample, 100 μl of spiking solution, 20 μl of 2,3,4,5,6-pentafluorobenzyl bromide (Sigma-Aldrich), and 800 μl of acetone (VWR, Lutterworth, Leicestershire, UK) were pipetted into Falcon™ round-bottom polystyrene tubes and placed in a heating block at 50 °C/120 min. Following incubation, acetone was evaporated under a nitrogen stream for 10 min. Samples were then allowed to cool before 2 ml of toluene (Fisher Scientific UK Ltd) was added to each tube and the tubes vortexed for 15 s. Subsequently, 1 ml of distilled H2O was pipetted into each tube, and the samples were re-vortexed twice for 15 s with a rest of 15 s in between. Using glass Pasteur pipettes, the top layer was transferred into amber glass vials and stored at -20 °C pending GCMS-analysis. Other variables such as column type and ionisation temperatures were as described by Tsikas (2000) (link).
+ Open protocol
+ Expand
4

Quantification of Acetazolamide Isotopologues

Check if the same lab product or an alternative is used in the 5 most similar protocols
[acetylo-2H3]Acetazolamide (d3-AZM; declared amount, 1 mg) was obtained from Hycultec (Beutelsbach, Germany) and was diluted in dimethyl sulfoxide (DMSO) in the original flask. The chemical and isotopic purity of d3-AZM had not been declared by the supplier. 2,3,4,5,6-Pentafluorobenzyl bromide, N,N-diisopropylethylamine, pentafluoropropionic anhydride (PFPA, >99%), 2,3,4,5,6-pentafluorobenzoyl chloride (>99%), unlabeled acetazolamide (d0-AZM; >99%) and all the other sulfonamides (>98%) used in the present study were obtained from Sigma-Aldrich (Darmstadt, Germany). DMSO and acetonitrile (GC grade; dried over molsieve) were purchased from Merck (Darmstadt, Germany). Toluene (p.a.) was purchased from Baker (Deventer, The Netherlands). The silylation reagent N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA, >99%) was obtained from Macherey-Nagel (Düren, Germany).
+ Open protocol
+ Expand
5

Quantitative Analysis of Organophosphate Pesticides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Analytical grade methanol, acetone, ethyl acetate, acetonitrile, hexane, and toluene were all purchased from J.T. Baker (Phillipsburg, NJ, USA). Concentrated hydrochloric acid (HCl, 36–38%, 6 N) was purchased from Merck (Darmstadt, Germany). Sodium chloride (NaCl, purity ≥ 99.5%), potassium carbonate (K2CO3, purity ≥ 99.0%) and 2,3,4,5,6-pentafluorobenzyl bromide (PFBBr, purity 99.0%) were purchased from Sigma Aldrich (St. Louis, MO, USA). Dimethylphosphate (DMP, purity 97.0%), sodium O,O-dimethyl thiophosphate (DMTP, purity 95.0%), O,O-dimethyl dithiophosphate (DMDTP, purity 95.0%), O,O-diethyl hydrogen phosphate (DEP, purity 96.0%), O,O-diethyl dithiophosphate (DEDTP, purity 95.0%), and O,O-diethylthiophosphate (DETP) potassium salt (purity 98.0%) were purchased from Chiron AS (Trondheim, Norway). Dibutyl phosphate (DBP, purity 99.0%), used as the internal standard, was purchased from Toronto Research Chemicals (Toronto, ON, Canada). Type I ultrapure water was generated in-house using an ELGA UHQPSII system (Buckinghamshire, UK).
+ Open protocol
+ Expand
6

Synthesis of Labeled Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Potassium nitrate (>99%) was purchased from Duchefa (Haarlem, the Netherlands). [15N]-Potassium nitrate (>98 isotope purity), mesitylene, heptane, indigo carmine, 2,4-dinitrotoluene, 1,3,5-trimethoxybenzene, toluene, 2,3,4,5,6-pentafluorobenzyl bromide, ethyl acetate, acetone, sodium tetraborate, and benzyldimethyltetradecylammonium chloride were purchased from Sigma (St. Louis, MO, USA). Sulfuric acid 96% and benzene were purchased from Carl Roth (Karlsruhe, Germany).
+ Open protocol
+ Expand
7

Lipid Metabolism Regulation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human recombinant interleukin-2 (IL-2), boron trifluoride (14% in methanol), 2,3,4,5,6-pentafluorobenzyl bromide, N,N-diisopropylethylamine, horseradish peroxidase-conjugated anti-β-actin, and the horseradish peroxidase-conjugated anti-rabbit antibodies were from Sigma-Aldrich (Oakville, Canada). The 1,2-diheptadecanoyl-sn-glycero-3-phosphocholine was from Biolynx (Brockville, Canada). Fatty acid methyl esters (FAMEs) and FFAs were obtained from Nu-Check Prep (Elysian, MN). Deuterated AA (5,8,11,14-eicosatetraenoic-5,6,8,9,11,12,14,15-d8 acid [AA-d8]) and deuterated EPA [5,8,11,14,17-eicosapentaenoic-19,19,20,20,20-d5 acid (EPA-d5)] were from Cayman Chemical (Ann Arbor, MI). Antibodies against acyl-CoA synthetase (ACSL) 4, Δ5-desaturase, Δ6-desaturase, and ELOVL2 were from Abcam (Toronto, Canada). Antibody against ELOVL5 was from OriGene Technologies (Rockville, MD), phycoerythrin-conjugated anti-CD69 was from Biolegend (San Diego, CA), PC7-conjugated anti-CD25 was from Beckman-Coulter (Indianapolis, IN), and the goat anti-rabbit horseradish peroxidase-conjugated secondary antibody was from Jackson ImmunoResearch Laboratories (West Grove, PA). The nonsilencing (NS) negative control siRNA and the siRNA against ELOVL5 were from OriGene Technologies.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!