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10 protocols using anti ckit apc

1

Characterization of AGM Hematopoietic Cells

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Single-cell suspensions from the AGM region were prepared by dispase/collagenase-mediated dissociation. Antibodies used for staining of cells were anti-CD45-BV450 (BD Horizon, clone 30F11, 1:100), anti-CD45-AF700 (1:100, clone 30F11, BD pharmingen), anti-VE-cadherin-AF647 or -AF488 (1:100, Clone eBioBV13, Biolegend) and biotinylated anti-VE-Cadherin (1:50, clone 11.D4.1, Pharmingen), followed by incubation with streptavidin-PE (1:600, BD Pharmingen), anti-CD43-PE (1:200, clone eBioR2/60, eBioscience), anti-cKit-APC (1:100, clone 2B8, eBioscience), anti-CD31-PE (1:200, MEC13.3, Pharmingen), anti-Sca1-V500 (1:100, clone D7, BD Bioscience), anti-CD41-BV421 (1:100, clone MWreg30, Biolegend) and anti-Ter119-PerCp-Cy5.5 (1:100, clone TER119, eBioscience). 7-Aminoactinomycin D viability staining solution was used to exclude dead cells, and gates were set using appropriate fluorescence minus one controls. Sorting was performed on a FACSAriaII using the FACSDiva software.
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2

Murine Innate-like T Cell Isolation and Stimulation

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Pancuronium bromide was purchased from Fisher Scientific (Hampton, NH), HDM extract was purchased from Greer Laboratories (Lenoir, NC), phosphate buffered saline (PBS) was obtained from Life Technologies (Carlsbad, CA), isoflurane was obtained from Vedco Inc. (St Joseph, MO), and Sodium-pentobarbital was purchased from Penro Specialty Compounding (Colchester, VT). Anti-CD16/CD32, anti-CD3-FITC, and anti-CD45-Pacific Orange were purchased from BD Pharmingen (San Jose, CA), anti-cKit-APC and anti-FcεRI-PE were obtained from eBioscience (San Diego, CA). CD1d tetramer loaded with PBS57 was provided by the NIH tetramer facility. The monoclonal antibody targeting iNKT cells, NKT-14 was provided by NKT Therapeutics (Waltham, MA) and the corresponding isotype-control IgG2a antibody was obtained from BioXcell (West Lebanon, NH), α-GalactosylCeramide (αGalCer) was purchased from Funakoshi Co. Ltd., Japan.
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3

Cell Surface Marker Expression Analysis

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Expression of cell surface markers was measured after blocking of unspecific binding sites with CD16/CD32Fc-Block (BD Biosciences, San Jose, CA, USA) by staining cells with anti-Gr-1-APC (BD Biosciences, San Jose, CA, USA, Clone RB6-8C5), anti-Ly6G (Gr-1)-PE (eBioscience, Clone RB6-8C5) anti-CD11b-PE (AbD serotec, Bio-Rad, München, Germany, Clone M1/70), anti-c-kit-APC (eBioscience, San Diego, CA, USA, Clone ACK2), anti-CXCR2-APC (Biolegend, San Diego, CA, USA, Clone TG11/CXCR2) or anti-CXCR4-APC (BD Biosciences, Heidelberg, Germany, Clone 2B11/CXCR4) followed by flow cytometry analysis on a FACS Calibur or Fortessa (BD Biosciences).
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4

Immunophenotyping of Hematopoietic Cells

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Cell suspensions were incubated for 5 minutes with 10% rat serum (MP Biomedicals) and 0.2% BSA (Roche) in PBS, then stained for 30 minutes at 4°C with biotinylated lineage markers (Mac1, Gr1, CD4, CD8, B220, Ter119, IL7Rα, CD19, and CD3 with streptavidin PerCPcy5.5 as secondary), anti-Sca1-PE, anti-cKit-APC, anti-Gr1-FITC, anti-Mac1-APC, biotinylated anti-CD4 and anti-CD8 (with streptavidin APC as secondary), and/or anti-B220-PE (eBioscience and BD Biosciences). The analyzer used for flow cytometry was the BD LSR II and data was analyzed using CellQuest.
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5

Multiparametric Flow Cytometry of Immune Cells

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Cells from peritoneal cavity and blood were resuspended in PBS with 2% FBS after red blood cell lysis and washed with PBS, and incubated with FACS antibodies for 30 min on ice. Cells were initially selected by size on the basis of forward scatter (FSC) and side scatter (SSC), following separated on the basis of cell-surface markers using a FACS Analyzer LSR (BD Biosciences). To detect macrophage percentage in peritoneal cavity and blood, we stained macrophages with anti-CD45-FITC (1:100, #11–0451-82, eBiosciences), anti-CD11b-APC and anti- F4/80-PerCP-Cyanine5.5. To detect monocyte, we stained cells with anti-CD45-PerCP-Cyanine5.5 (1:100, #45–0451-82, Invitrogen), anti-CD11b-APC, and anti- Ly6C-FITC (1:250, #53–5932-82, Invitrogen). To detect mast cells, we stained cells with anti-CD45-PerCP-Cyanine5.5, anti-c-kit-APC (1:100, #17–1171-82, eBiosciences) and anti-FcεR1-FITC (1:250, #11–5898-82, eBiosciences). To detect basophils, we stained cells with anti-CD45-PerCP-Cyanine5.5, anti-CD63-PE/Cy7 (1:100, #143910, BioLegend), and CD200R3-PE (1:100, #142206, BioLegend).
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6

Purification and Stimulation of Murine Immune Cells

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Bone marrow cells from TSLP-ZsG reporter mice were cultured with GM-CSF (30 ng/ml; PeproTech) in RPMI 1640 medium supplemented with 10% FBS, 2mM glutamine, 100 U/ml penicillin and streptomycin. On day 8, the suspended cells were stained with anti-CD11c-PE and anti-CD19-APC (ebioScience) and the CD11c+CD19- cells (dendritic cells) were purified by cell sorting using a FACS Aria III (Becton Dickinson). After sorting, the dendritic cells were stimulated with 1μg/ml LPS (Invivogen) plus 10ng/ml IL4 (PeproTech) for 4hrs. Bone marrow cells from TSLP-ZsG reporter mice were also cultured with IL3 (50ng/ml; R&D) in RPMI 1640 medium supplemented with 10% FBS, 2mM glutamine, 100 U/ml penicillin and streptomycin. On day 9, the suspended cells were strained with anti-cKit-APC and anti-FcεR1-eF450 (ebioScience). The cKit+ FcεR1+ cells (mast cells) and cKit- FcεR1+ cells (basophils) were purified by cell sorting. After sorting, basophils were stimulated with PMA (1μM) and inomycin (10ng/ml) for 3hrs. The mast cells were expanded by culture in IL-3 for 8 days and then stimulated with PMA and ionomycin.
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7

Hematopoietic Stem Cell Immunophenotyping

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Cell suspensions were incubated for 5 minutes with 10% rat serum (MP Biomedicals) and 0.2% BSA (Roche) in PBS, then stained for 30 minutes at 4°C with biotinylated lineage markers (Mac1, Gr1, CD4, CD8, B220, Ter119, IL7Rα, CD19, and CD3 with streptavidin PerCPcy5.5 as secondary), anti-Sca1-PE, anti-cKit-APC, anti-CD34-FITC, anti-CD16/32-PEcy7, anti-Gr1-FITC, anti-Mac1-APC, biotinylated anti-CD4 and anti-CD8 (with streptavidin APC as secondary), anti-B220-PE, anti-CD71-PE, and/or anti-CD36-APC (eBioscience and BD Biosciences). The analyzer used for flow cytometry was the BD LSR II and data was analyzed using CellQuest.
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8

Flow Cytometric Analysis of Hematopoietic Cells

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For flow cytometric analysis, cells were resuspended in FACS buffer (PBS supplemented with 2% FCS, 1 mM EDTA and 0.1% sodium azide (both Sigma-Aldrich)). EB-derived HPCs were treated with mouse Fc-blocking antibodies (BD Biosciences, Cat# 553142) for 5 minutes at 4 °C prior to staining with anti-CD41-PE (Cat# 12-0411-81) and anti-cKit-APC (Cat# 17-1171-81) antibodies, or corresponding isotype controls respectively (all eBioscience), and stained with 7-AAD for 2 min before analysis on BD Accuri C6 flow cytometer (BD Biosciences). ESC-derived T cells were stained with anti-CD45-APC-Cy7 (Cat# 557659), anti-CD4-PerCPR-Cy5.5 (Cat# 550954), anti-CD8-PE-Cy7 (Cat# 552877) (all BD Biosciences), anti-CD44-PE (Cat# 12-0441-81), anti-CD25-APC (Cat# 17-0251-81), anti-TCRß-FITC (Cat# 11-5961-82), anti-CD3e-PE (12-00331-82) (all eBioscience) antibodies and DAPI, before analysis on a FACSCanto II (BD Biosciences). All samples were evaluated using FlowJo software (Tree Star). To eliminate OP9-DL1 stroma cells from analysis, all samples were gated for CD45+ cells.
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9

Neutrophil Progenitor Characterization

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Staining for cellular and nuclear morphology was performed on cytospins from cultures of progenitors or differentiated neutrophils by incubating with Giemsa solution (Merck, Darmstadt, Germany) after methanol fixation. Analysis by brightfield microscopy was performed using a Keyence BZ9000 microscope at a magnification of x40 (Keyence, Neu-Isenburg, Germany).
Expression of cell surface markers was measured by staining cells with anti-Gr-1-FITC (BD Biosciences, San Jose, CA, USA), anti-CD11b-APC (eBioscience, San Diego, CA, USA), anti-c-kit-APC (eBioscience) or anti-CXCR2-APC (Biolegend, San Diego, CA, USA) followed by flow cytometry analysis on a FACS Calibur (BD Biosciences, Heidelberg, Germany).
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10

Multiparameter Flow Cytometry Analysis of Leukemia

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For evaluation of MLL-AF9-transduced leukemia development, either peripheral blood or BM cells were stained with anti-Mac-1-APC, anti-Gr-1-PE, anti-CD3-APC, anti-B220-PE or anti-c-Kit-PE monoclonal antibodies (eBioscience) for the analyses of the myeloid and lymphoid lineages, differentiation, and cell frequencies of Mac-1 + c-Kit + LICs. For examination of Lin À CD127 À Sca-1 À c-Kit + CD16/32 + CD34 + L-GMP cells, BM leukemia cells were stained with biotinylated anti-CD3, anti-CD8, anti-B220, anti-Gr-1, anti-Ter119 and anti-CD127 antibody followed by staining with streptavidin-PE/Cy5.5, anti-Sca-1-PE/CY7, anti-c-Kit-APC, anti-CD16/ 32-eFluo450 and anti-CD34-PE (eBioscience). To determine the ratios of SoNar fluorescence, cells were excited at 405 nm/488 nm and acquisited at 525 nm (for SoNar sensor), or excited at 405 nm/561 nm and acquisited at 525 nm/610 nm (for SoNar-mCherry sensor), respectively. The mean fluorescence intensities and ratio (405/561) histograms were analyzed for the calculation of SoNar's signal by using FlowJo software v10. For the evaluation of homing ability, CXCR4 antibody (eBioscience) was used. The cell cycle status of SoNar-high and low AML cells were measured by staining with Hoechst 33342/Pyronin Y as previously described (Zheng et al., 2011) .
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