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Anti v5 tag

Manufactured by Thermo Fisher Scientific
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The Anti-V5 tag is a laboratory equipment product used for the detection and purification of proteins that have been engineered to express a specific V5 peptide sequence. This tag allows for the identification and isolation of the target protein of interest.

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21 protocols using anti v5 tag

1

Western Blot Analysis of Protein Expression

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Protein lysates were extracted using RIPA lysis buffer (Pierce, Thermo Fisher Scientific). Protein estimation was conducted using a BCA protein assay kit (Pierce). Protein lysates were denatured and subjected to SDS-PAGE electrophoresis. Proteins were then transferred onto a nitrocellulose membrane and blocked with 5% non-fat milk, followed by the incubation with primary antibody at 4 °C overnight. Membranes were then rinsed and incubated with a corresponding secondary antibody (1:5000, Invitrogen) at room temperature for 1 h. Signal was visualized using Pierce ECL plus Western blotting substrate (Pierce). The following primary antibodies were used in this study: anti-POU1F1 (1:3000; Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-HA tag (1:2000; Invitrogen); anti-V5 tag (1:2000; Invitrogen); anti-CD163 (1:5000; Abcam); anti-CD206 (1:5000; Sigma–Aldrich, St Louis, MO, USA), anti-CD11b (Novus Biologicals, Centennial, CO, USA); anti-VEGFA (1:5000; Santa Cruz); anti-p-CXCR4 (1:1000; Abcam, Cambridge, UK); anti-CXCR4 (1:1000; Abcam); anti-p-Akt (1:1000; Cell signaling technology, Beverly, MA, USA); anti-Akt (1:1000; Cell signaling technology); anti-p-VEGFR2 (1:1000; Cell signaling technology); anti-VEGFR2 (1:1000; Cell signaling technology); anti-GAPDH (1:3000; Santa Cruz).
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2

Western Blot Analysis of V5-tagged Protein

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Total protein (10 µg) was run on 10% SDS–PAGE gel and transferred onto Hybond-P membrane (GE Healthcare). Membranes were incubated with anti-V5 tag (Invitrogen, R96025) or anti-GAPDH (Cell Signaling 14C10) antibody, followed by HRP-conjugated secondary antibodies (NA931 and NA934, GE Healthcare). Chemiluminescence was detected using the LAS-3000 imager (Fuji). Blots were quantified using the Aida software (Raytest, Germany) and V5-65K signal was normalized to GAPDH signal.
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3

Immunoprecipitation of Cactin-V5 in DCV-infected S2 Cells

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S2 cells were transfected using Cactin-V5 expressing plasmids and then infected with DCV (MOI=1) for 48 h, if necessary. For IP, cells (5×107) were collected and suspended in lysis buffer (2 mM EDTA, 50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 20% glycerol) supplemented withPhenylmethanesulfonyl fluoride (PMSF) (Sangon Biotech) on ice for 30 min. After centrifugation at 13,000 rpm for 10 min at 4°C, the lysates were incubated for 4 h with the anti-V5 tag antibody (Invitrogen) at 4°C, followed by further incubation with Protein A/G Agarose for1h. The beads were washed five times with lysis buffer. The proteins were eluted by boiling the beads for 5 min in 1 × SDS loading buffer and analyzed by Western blot with the anti-V5 tag (Invitrogen) or anti-p-Ser/phosphoserine (Santa Cruz).
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4

Characterization of Redox-Sensitive Proteins

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The plasmid vector encoding V5‐tagged α1‐antitrypsin, influenza virus HA, bovine preprolactin, and cVIMP‐cys were gifted from Lisa Swanton (University of Manchester), Mary Jane Gething (University of Melbourne), Stephen High (University of Manchester), and Lars Ellgaard (University of Copenhagen), respectively. The β1‐integrin, hemagglutinin, and the soluble Sec‐Cys variant of SelS/VIMP (cVIMP‐cys) sequences have been described previously (Gething et al, 1980; Tiwari et al, 2011; Christensen et al, 2012). Auranofin, carmustine, and DHEA were purchased from Sigma‐Aldrich; TRi2 synthesis will be described elsewhere (Stafford, W. et al, manuscript in preparation). The commercial antibodies used were anti‐His (Proteintech), anti‐V5‐tag (Invitrogen), and 9EG7 (BD Bioscience). Antibody to LDLr (121) was a gift from Ineke Braakman (Utrecht University; Pena et al, 2010). Purified recombinant ChaC1 enzyme was a gift from David Ron (University of Cambridge; Tsunoda et al, 2014). The plasmid containing human thioredoxin (hTrx) with a streptavidin binding peptide (SBP) tag was a gift from Tobias Dick (German Cancer Research Centre, Heidelberg). Recombinant Trx protein was purified as described previously (Schwertassek et al, 2007).
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5

Western Blot Protein Expression Analysis

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Cell lysis was done in ice-cold RIPA lysis buffer supplemented with protease and phosphatase inhibitors. Then, proteins were resolved by SDS-PAGE and electroblotted onto Hybond-P membranes (Amersham). Membranes were blocked using Blotting-Grade Blocker (Bio-Rad, cat# 1,706,404) followed by incubation with primary antibody overnight (4℃), and then secondary antibody for 1 h at room temperature. Signal was then developed by ECL™ Detection Reagents (Amersham Biosciences) and quantitated with ImageJ. Antibodies used are: anti-mouse IgG-HRP (DAKO, P0161), anti-rabbit IgG-HRP (DAKO, P0448), GAPDH (Millipore, MAB374), Anti-V5-Tag (Invitrogen, R96025), E-cadherin (CST, 4065), vimentin (Sigma: V6630), Twist (Santa Cruz, sc-15393), MMP7 (Thermo Fisher, MS-813-P0), Total EGFR (CST: 54,359), p-EGFR (CST: 3777), Total FAK (CST: 71,433), p-FAK (Tyr397) (CST: 8556), Total SRC (CST: 2191), p-SRC (CST: 59,548), Total β-catenin (CST: 59,548), active β-catenin (Millipore, 05,665), p-β-catenin (Ser552) (CST: 5651), c-Myc (CST: 18,583), cyclinD1 (CST: 55,506), p-ERK1/2 (CST: 9101), Total ERK1/2 (CST: 4695), Cleaved-Caspase3 (CST: 9661), Cleaved-PARP (CST: 9541), Caspase 3 (CST:9504), PARP (CST: 9532), Bax (CST:2772), Bcl-2 (CST: 2872).
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6

Comprehensive Analysis of CNOT Complex

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We carried out protein extractions, immunoprecipitations (IP) and western blot as described previously (26 (link)). Extracts of total proteins from MCF7 cells were obtained as described in (32 (link)). The affinity-purified rabbit polyclonal antibody against hCNOT7 was previously described (28 (link)). Anti-CNOT1, CNOT3 and CNOT10 were purchased from Proteintech (14276-1-AP, 11135-1-AP and 15938-1-AP, respectively), and anti-CNOT2 (6955) and anti-CNOT6 (13415) from Cell Signaling. For IP and/or immunofluorescence (IF) analyses, the mouse polyclonal anti-CNOT7 (AO1) from Abnova and the mouse monoclonal anti-V5 tag from Invitrogen were used. Anti-PRMT1 (07–404) and anti-SAM68 (07–415) antibodies were purchased from Upstate Biotechnology, while the anti-GAPDH (clone 6C5) was supplied by Biodesign International. The other antibodies used recognized alpha-Tubulin (sc-23948, Santa Cruz Biotechnology), DDX6 (A300-460A, Bethyl Laboratories), CD44 (ab6124, Abcam), CD44v5 (BMS115, eBioscience), ASYM24 (EMD Millipore) and Flag (M2 Sigma).
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7

Co-Immunoprecipitation of Cactin and PGK Proteins

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S2 cells were co-transfected with Cactin-V5 and PGK-Flag expressing plasmids, respectively, and then infected with DCV (MOI = 1) for 48 h if necessary. For Co-IP, cells (5 × 107) were collected and suspended in lysis buffer (2 mM EDTA, 50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 20% glycerol) supplemented with PMSF (Sangon Biotech) on ice for 30 min. After centrifuging at 13,000 rpm for 10 min at 4°C, the lysates were incubated for 4 h with the anti-V5 tag antibody (Invitrogen) at 4°C, followed by further incubation with Protein A/G Agarose for 1 h. The beads were washed five times with lysis buffer. The proteins were eluted by boiling the beads for 5 min in 1× SDS loading buffer and analyzed by western blotting with the anti-V5 tag (Invitrogen) and anti-Flag tag (Sigma).
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8

Co-Immunoprecipitation and RNA Isolation

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A total of 5 3 10 7 cells were lysed in RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 10mM EDTA, 1% NP-40, 1 mM PMSF) supplemented with RNase inhibitor (Thermo Fisher Scientific) and protease inhibitor cocktail (Roche) on ice for 30 min. After centrifuging at 13,000 rpm for 10 min at 4 C, the supernatant was pre-cleared with Protein A Agarose (Millipore) at 4 C for 1 h. Anti-V5 tag (Invitrogen) or control IgG antibodies was added to the pre-cleared supernatant and incubated for 4 h at 4 C. Thereafter, Protein A Agarose was added and allowed to bind for 1 h. The bead-bound immunocomplexes were washed 5 3 5 min with RIPA buffer, and one-fifth of the bead volume after the last wash was saved for western blot analysis. The remaining complexes were eluted using elution buffer (100 mM Tris pH8.0, 10 mM EDTA, 1% SDS). To isolate protein-associated RNAs from the eluted complexes, samples were treated with proteinase K, and RNAs were extracted by phenol/chloroform. Purified RNAs were thereafter subjected to RT-qPCR analysis.
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9

Whole Cell Protein Extraction and Analysis

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Whole cell extracts were obtained by lysing cells in 1% SDS and 10 mM Tris-HCl (pH 7.4) supplemented with protease inhibitors (Sigma-Aldrich) and phosphatase inhibitors (Halt phosphatase inhibitor cocktail; ThermoFisher). Viscosity of the samples was reduced by brief sonication. To detect PAR, cell extracts were performed as described previously31 (link). To detect ATM, ATM-pS1981, DNA-PK and DNA-PK-pS2056, cell extracts were prepared as previously described22 (link). Proteins were separated by SDS-PAGE and immunoblotted with the following antibodies: anti-actin (MAB1501; Millipore), anti-ATM (ab32420; Abcam), anti-ATM-pS1981 (ab81292; Abcam), anti-cleaved caspase-3 (#9664; Cell Signaling), anti-caspase-9 (#9502; Cell Signaling), anti-Chk1 (sc84081; SantaCruz), anti-Chk1-pS345 (#2348; Cell Signaling), anti-DNA-PK (ab1832; Abcam), anti-DNA-PK-pS2056 (ab18192; Abcam), anti-HIF1α (NB100–449; Novus), anti-PAR (AM80–100UG; Millipore), anti-p53 (#48818; Cell Signaling), anti-p53-pS15 (#9284, Cell Signaling), anti-PARP-1 (#9542; Cell Signaling), anti-TOP1 (ab109374; Abcam), anti-Tubulin (T5168; Sigma-Aldrich), anti-V5 tag (46–0705; Invitrogen). Immunoblotting was revealed by chemiluminescence using ChemiDoc MP System (Bio-Rad). Quantification of protein levels was done with Image Lab software (version 4.1).
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10

Characterization of SR-B1 Protein Interactions

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MG-132, leupeptin hemisulfate (Leu), chloroquine diphosphate, and protease inhibitor were purchased from MCE (MedChemExpress USA Co, Ltd). CHX was obtained from Glpbio Company. The PCR reagents were purchased from TAKARA Takara Biotechnology (Dalian) Co LTD Ltd. Most of the tissue culture supplies were procured from Thermo Fisher Scientific Inc through its Gibco Cell Culture Media Division. Antibodies against β-actin and ubiquitin were supplied by Santa Cruz Biotech. Anti-SR-B1 antibody (NB400-104) for co-immunoprecipitation was purchased from Novus Biologicals, LLC. The preparation of in-house generated polyclonal anti-SR-B1 antibody for western blotting has been described previously (23 (link)). The other following antibodies were also employed and obtained from the indication sources: anti-V5 tag from Invitrogen; anti-flag from Cell Signaling; anti-GIPC1 and anti-Tubulin from Abgent; secondary antibodies for western blotting, Goat-Anti-Rabbit and Goat-Anti-Mouse from Vazyme Biotech Co, Ltd.
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