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17 protocols using inlab micro

1

Predemineralization and Bacterial Induction

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First, root dentin samples were predemineralized in 1 L of a demineralizing solution (pH 5.0, 37 °C) containing 50 mM acetic acid, 3 mM CaCl2 × H2O, 3 mM KH2PO2 and 6 mM methyl-hydroxydiphosphonate for 2 days [31 (link)]. The pH of the solution was monitored daily (InLab micro, Mettler-Toledo, Giessen, Germany) and if necessary adjusted using HCl (Roth, Karlsruhe, Germany) or 10 M KOH. Samples were then incubated with overnight cultures of LGG in MRS-S for 24 h to induce bacterially contaminated lesions. Biofilms were removed from the surface areas of each specimen with a sterile scalpel. To allow enumeration of baseline bacterial load of induced lesions, dentin from one quarter of the lesion was now excavated using sterile rose-head burs and the net weight of excavated dentin assessed (Analytical Plus, Ohaus, Nänikon, Switzerland). Dentin was dissolved in 1 mL NaCl (0.9%), vortex mixed, and plated on MRS agar in various dilutions (102–104). Agar plates were cultured at 37 °C and 5% CO2 (CO2 Incubator, Heraeus Kulzer, Hanau, Germany). After 48 h, colony forming units per µg dentin (CFU/µg) were enumerated.
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2

Intracellular pH Determination by Membrane Permeabilization

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The determination of the intracellular pH was performed after Scholes and Mitchell (1970) (link) via permeabilization of the membrane with 5% (vol/vol) butanol. Cells were harvested by centrifugation (150 ml culture, 10.000 × g, 10 min, 4°C, Beckman J2-HS), the supernatant was discarded and the pellet was resuspended in 5 ml of non-buffered solution (0.3 M NaCl, pH 7). The measurement was performed in a 5 ml glass tube with an OD436 of 20. For the determination of the pHi under anoxic conditions the glass tube was closed with a rubber stopper and flushed with N2 for 2 h. A pH electrode (type Inlab Micro, Mettler Toledo) was immersed and the suspension was stirred. The data were logged (AD converter ADC-16, pico Technology) with the software MPwin (version 2008.08.25, Cypionka, 2005 ). For permeabilization 250 μl of butanol were added into the stirred suspension. From the pH changes after butanol addition at different outer pH values, the pHi could be determined.
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3

pH Measurement of Dental Samples

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Each sample was immersed only from CEJ to apex in 300 μl of deionized water in a separate vial and stored at 37°C with 100% humidity. pH of the immersion solutions was measured using the pH meter (420A pH meter; Thermo Orion, Inc., Beverly, MA, USA) with microelectrode (InLab® Micro; Mettler Toledo, Greifensee, Switzerland) at 7, 14, and 28 days. After each measurement, the immersion solutions were replaced with fresh 300 μl of deionized water in each vial.
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4

Extracting Aβ Oligomers using NMR

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To obtain
samples containing Aβ oligomers, lyophilized Aβ1-42 was
dissolved in 10 mM NaOD and then diluted 1:1 with 20 mM deuterated
PB (pH 7.4) to a final concentration of 120 μM and in the presence
of hop extract-enriched fractions (4 mg/mL). The pH of each sample
was measured with a Microelectrode (InLab Micro, Mettler Toledo, Columbus,
OH) and adjusted to pH 7.4 with NaOD and/or DCl. All pH values were
corrected for the isotope effect. Experiments were run on an AVANCE
III 600 MHz NMR spectrometer (Bruker, Billerica, MA) equipped with
a QCI (1H, 13C, 15N/31P, and 2H lock) cryogenic probe. A basic sequence from
the Bruker library was employed for the STD experiments. A train of
Gaussian-shaped pulses of 50 ms each was employed to saturate the
protein envelope selectively; the total saturation time of the protein
envelope was adjusted to the number of shaped pulses and set at 2
s. On- and off-resonance spectra were acquired in an interleaved mode
with the same number of scans. The STD NMR spectrum was obtained by
subtracting the on-resonance spectrum from the off-resonance spectrum.
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5

pH Measurement in Hypoxic Conditions

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pH of cell culture media was measured by a special microelectrode (Mettler Toledo, InLab® Micro) designed for measurement in small volumes. The measurement by the electrode was done directly in the hypoxic workstation under the oxygen concentration of 2%. The graph in Fig. 5A gives the difference between pH of the culture medium of cells with silenced ADCY isoforms and medium of control cells. Data are presented as mean ± stdev of three independent experiments.
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6

Measuring pH and Buffering Capacity

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The pH values of media and buffers were measured using a pH meter (calimatic 766, Knick, Berlin, Germany) and a pH electrode (InLab-micro, Mettler-Toledo, Giessen, Germany). The buffering capacity of PBS was determined by titration with HCl. The obtained data were used to calculate the concentration and accumulation rate of oxonium ions in plasma-treated buffer.
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7

Soil Elemental Composition Analysis

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Wavelength-Dispersive X-Ray Fluorescence (XRF; Axios FAST, Malvern Panalytical, Malvern, United Kingdom) analyses was used to determine the concentrations of selected major (Si, Al, Fe, Mg, Ca, N, K, P) and trace (Mn, As, Co, Cr, Cu, Mo, V, U, Zn, Zr) elements of soil samples. For each analysis 0.7 g of dried and sieved (2 mm) sample were used and measured according to Atar et al. (2019) (link). Major and trace elements are reported as weight% and ppm, respectively.
Soil pH was measured in an aqueous suspension (soil:deionized water, 1:2.5, v:v) using a InLab Micro (Mettler Toledo, Giessen, Germany).
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8

Potentiometric Titrations of Amyloid-β Peptides

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Potentiometric titrations were performed on
a Titrando 907 automatic titrator (Metrohm) using a combined glass-Ag/AgCl
electrode (InLabMicro, Mettler Toledo, Switzerland). The electrode
was calibrated daily by titrating nitric acid.26 (link) The CO2-free solution of 0.1 M NaOH was used
as the titrant. All experiments were performed under argon at 25 °C.
Sample volumes were 1.5 mL. The samples contained 1.0 mM Aβ
peptide (Aβ5–16, Aβ5–12, Aβ5–9) dissolved in 4 mM HNO3/96 mM KNO3. The Cu(II) complex formation was studied
for the different peptide:metal stoichiometries (1:2, 1:1, 1:0.5)
using a 5–10% excess of peptides over metal ions, over the
pH range from 2.3 to 12.2. SUPERQUAD and HYPERQUAD were used to analyze
the data.27 (link),28 (link) At least three titrations were performed
separately to determined the protonation and Cu(II) stability constants
of the studied compounds.
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9

Measuring Extracellular pH in Hypoxia

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Cells were either maintained in normoxia (21% O2) or exposed to hypoxia (2% O2) for 48 h. pH of cell culture media was measured by a microelectrode (InLab® Micro, Mettler Toledo, OH, USA) designed for small volumes. Values of extracellular pH in cells grown in constant medium volumes were obtained in four independent experiments with three parallel dishes for each cell line.
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10

Physicochemical Characterization of Lipid Nanoparticles

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The hydrodynamic diameter (reported as intensity-based z-average) and the polydispersity index (PdI) were determined by dynamic light scattering (DLS) using a Zetasizer (Zetasizer Nano ZSP, ZEN5600, Malvern, UK, Software 7.02). The zeta-potential was determined by electrophoretic light scattering (ELS), using the same equipment. The Zetasizer was equipped with a He-Ne Laser at a wavelength of 633 nm, DLS was done at a backscattering angle of 173° and ELS at an angle of 13°. For the measurements, 20 μL of the final NP-suspension was diluted in 800 μL water. The pH of the final NP-suspensions and aqueous drug solution of TFB-C in phos-buffer (2 mg TFB/mL) (aqTFB-C) was determined by a pH meter (Mettler Toledo Seven Compact PHS 210 including pH electrode Mettler Toledo InLab® Micro, Switzerland). To determine the colloidal storage stability of TFB SqD NPs and drug-free SqD NPs at 4 °C, the measurements were repeated after 12 and 24 days. Three experiments were conducted and measurements were done in triplicates. Results are reported as mean ± SD.
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