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52 protocols using ab32047

1

Western Blotting of Brain Proteins

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Western blotting was performed as described previously [20 (link)]. Briefly, the brain protein samples were prepared using Ripa Lysis buffer (Bio-Rad, CA), and equal amounts of protein were run on an SDS-PAGE gel. After being electrophoresed and transferred to a nitrocellulose membrane, the membrane was blocked and incubated with primary antibody overnight at 4 °C. The following primary antibodies were used: AdipoR1 (1:1000, ab126611), p-AMPKα (1:1000, ab133448), AMPKα (1:1000, ab32047), p-NFκB (1:1000, ab86299), NFκB (1:2000, ab16502), tumor necrosis factorα (TNFα) (1:1000, ab6671), interleukin-6 (IL-6) (1:1000, ab6672) (all from Abcam, MA), CTRP9 (1:500, NBP2–46834, Novus, CO), and adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 (APPL1) (1:1000, sc-271,901, Santa Cruz Biotechnology, CA). β-actin was used as an internal loading control. The respective secondary antibodies were incubated for 1 h at room temperature. The bands were probed with an ECL Plus chemiluminescence reagent Kit (Amersham Biosciences, Arlington Heights, PA) and visualized with the image system (Bio-Rad, Versa Doc, model 4000). Relative density of the protein immunoblot images were analyzed by ImageJ software (ImageJ 1.4, NIH, USA).
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2

Immunofluorescence Analysis of Brain Injury Markers

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Sections of the formalin‐fixed paraffin‐embedded brain tissue specimens were cut into 4 μm slides, dewaxed with xylene (twice, 15 minutes each time) and hydrated in an alcohol gradient (100%, 95%, 85% and 75%, 5 minutes in each concentration). Thereafter, the slides were stained with haematoxylin and eosin (H&E) to assess the degree of brain injury. The hydrated slides were processed for antigen retrieval under high temperature and pressure (3 minutes), and blocked with goat serum before immunofluorescence staining. Subsequently, the slides were incubated overnight at 4°C with primary antibodies against the following proteins: SESN2 (PA5‐72834, Thermo Fisher, MA, USA), NeuN (MAB377, EMD Millipore, Billerica, MA, USA), GFAP (MAB360, EMD Millipore Billerica, MA, USA), p‐AMPK (ab32047, Abcam, CA, UK), p‐mTOR (ab109268, Abcam, CA, UK) and p‐ULK1 (ab203207, Abcam, CA, UK). The sections were then incubated with either fluorescein isothiocyanate/tetramethylrhodamine‐conjugated antimouse, or rabbit IgG antibodies (Thermo Fisher, MA, USA), at 37°C for 1 hour. Finally, nuclei were stained with 4',6‐diamidino‐2‐phenylindole (DAPI) (Beyotime, Beijing, China), and a total of 6 sections per group were analysed under a DX51 microscope (Nikon Corporation, Tokyo, Japan).
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3

Western Blot Analysis of Autophagy-Related Proteins

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Treated cells were dissolved in RIPA buffer including protease inhibitors, and then 20 µg protein samples were added to SDS-PAGE gel electrophoresis followed by a transfer of protein to a PVDF membrane. Membranes were sealed using 5% fat-free milk for 1 h and then cultured with antibodies against LOX (Abcam, ab174316), Beclin-1 (Abcam, ab207612), LC3B (Abcam, ab192890), p62 (Abcam, ab109012), ATG5 (Abcam, ab108327), mTOR (Abcam, ab134903), p-mTOR (Abcam, ab109268), AMPKα (Abcam, ab32047), p-AMPKα (Abcam, ab133448), NFATC1 (Abcam, ab25916), ACP5 (Abcam, ab238913), CTSK (Abcam, ab239506), and GAPDH (Cell Signaling Technology, #5174) overnight at 4 °C. After a 30-min washing step in TBS containing 0.1% Tween20, the membranes were cultured with HRP (horseradish peroxidase)-conjugated secondary antibodies (Abcam, ab205718 and ab6728). Visualization was carried out using Pierce™ ECL western blotting substrate (Thermo Fisher Scientific, USA) according to the manufacturer’s protocol. Analysis was performed with Image-Pro Plus software.
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4

Comprehensive Western Blot Analysis of Key Signaling Pathways

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Western blot was conducted as per our previous reports6 (link),25 (link),48 (link). Briefly, blots were first incubated with antibodies to the following proteins: Nrg4 (1:1,000 dilution, Thermo Fisher, PA5-102641), P-IKKβ (Ser176/180) (1:1,000 dilution, CST, 2697), IKKβ (1:1,000 dilution, CST, 2684), P-p65 (Ser468) (1:1,000 dilution, CST, 3039), p65 (1:1,000 dilution, CST, 8242), P-IκBα (Ser32) (1:1,000 dilution, CST, 2859), IκBα (1:1,000 dilution, CST, 9242), P-ERK (Thr202/Tyr204) (1:1,000 dilution, CST, 4376), ERK (1:1,000 dilution, CST, 4695), P-Akt (Ser473) (1:1,000 dilution, CST, 4051), Akt (1:1,000 dilution, CST, 4691), AMPK (1:1,000 dilution, Abcam, ab32047), P-AMPK (Thr183 + Thr172) (1:1,000 dilution, Abcam, ab133448), ErbB4 (1:1,000 dilution, Abcam, E200), MMP2 (1:1,000 dilution, Abcam, ab92536), MMP9 (1:1,000 dilution, Abcam, ab76003) and GAPDH (1:3,000 dilution, CST, 5174). Binding of the primary antibody was detected by incubating membranes with a horseradish peroxidase-conjugated goat anti-mouse secondary antibody (1:2,000 dilution, Abcam, ab205719).
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5

Comprehensive Protein Expression Analysis

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Western blot analysis was performed as previously described. Briefly, cells were lysed in RIPA buffer to extract total proteins. Proteins were separated by SDS-PAGE gel and were electrically transferred to a polyvinylidene difluoride membrane. The membrane was blocked with 5% non-fat milk to prevent non-specific binding of antibodies and incubated with specific primary antibodies of KCNK3 (A14745, 1:1000, ABclonal, China), GLUT1 (ab115730, 1:10000, abcam, USA), LDHA (ab47010, 1 µg/ml, abcam, USA), AMPK (ab32047, 1:2000, abcam, USA), p-AMPK (2535 T 1:1000, CST, USA) and TXNIP (ab188865, 1:1000, abcam, USA) at 4 °C overnight. Corresponding HRP-conjugated secondary antibodies were incubated for 1 h at room temperature. Immunoreactive proteins were visualized using Image Quant LAS 4000 (GE Healthcare Life Science, Chicago, IL, USA).
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6

Immunofluorescence Analysis of Cardiac Tissue

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The hearts were fixed in 4% paraformaldehyde, embedded in paraffin, sectioned into 5‐µm thick slices and then underwent immunofluorescence28. Antibodies used in this experiment included anti‐MEF2 (sc‐17785; Santa Cruz Biotechnology; Santa Cruz, CA, USA) and anti‐proliferating cell nuclear antigen (ab32047; Abcam). All antibodies were diluted according to the manufacturer’s instructions. The images obtained were visualized under an OLYMPUS DP70 microscope (Tokyo, Japan).
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7

Western Blotting for Cellular Signaling

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Western blotting was performed with the SDS-PAGE electrophoresis system. Adherent cells or adipose tissue extracts were prepared and transferred to PVDF membranes. The following primary antibodies were used: anti-GAPDH (ap0063, Bioworld), anti-Col15α1 (ab150463, Abcam), anti-Caspase-9 (ab32539, Abcam), anti-Cleaved Caspase-9 (bs7070, Bioworld), anti-Caspase-3 (Bs6428, Bioworld), anti-Cleaved Caspase-3 (bs7004, Bioworld), anti-Bcl2 (bs1511, Bioworld), anti-Bax (ab32503, Abcam), anti-AMPK (ab32047, Abcam), anti-pAMPK (ab133448, Abcam), anti-mTOR (ab87540, Abcam), anti-pmTORC1Ser2448 (ab109268, Abcam), anti-Akt (ab8805, Abcam), anti-pAktSer473 (ab18206, Abcam), anti-S6K1 (ab32529, Abcam), anti-pERK1/2 (ab201015, Abcam), anti-ERK1/2 (ab17942, Abcam), anti-pS6K1Thr389 (ab2571, Abcam), anti-Collagen I (ab34710, Abcam), anti-Collagen VI (ab6588, Abcam), anti-Fibronectin (ab2413, Abcam), anti-MMP2 (ab92536, Abcam), anti-MMP9 (ab38898, Abcam), anti-TIMP1 (WL02342, Wanleibio), anti-TIMP2 (ab180630, Abcam), anti-FGFR1 (ab31324, Abcam), anti-pFGFR1Tyr653/Tyr654 (GTX133526, GeneTex), anti-TGFβ1 (WL03092, Wanleibio). Horseradish peroxidase anti-rabbit or anti-goat (Sigma–Aldrich) were used as secondary antibodies.
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8

Quantification of Protein Expression in Lung Tissue

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Total protein was extracted from lung tissue and quantified through the BCA assay. Each sample containing 40 μg of mixed loading buffer was boiled at 100 °C for 15 min. The sample was separated by 10% SDS-PAGE and transferred to a PVDF membrane. The membrane was incubated with QuickBlock™ blocking buffer (P0235, Beyotime) at 25 °C for 10 min and then rinsed with Western wash buffer (P0023C, Beyotime) for 5 min 3 times. Anti-rabbit p-AMPK (dilution: 1:500, ab133448, Abcam, Cambridge, UK), anti-rabbit AMPK (dilution: 1:1000, ab32047, Abcam, Cambridge, UK), anti-rabbit cleaved-caspase-1 (dilution: 1:500, ab179515, Abcam, Cambridge, UK), anti-rabbit cleaved-caspase-3 (dilution: 1:500, ab32351, Abcam, Cambridge, UK) and GAPDH (dilution 1:1000, K106389P, Solarbio) were used for overnight incubation of PVDF membranes at 4 ℃. After rising with Western washing buffer 3 times, the membranes were incubated with goat anti-rabbit secondary antibody (dilution 1:1000, A0562, Beyotime) at 25 ℃ for 1 h. After washing 3 times with Western washing buffer, protein bands were detected using BeyoECL Moon (P0018, Beyotime). The ratio between the gray value of the target protein and the GAPDH bands (internal reference) was calculated using ImageJ.
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9

Quantification of AMPK and SIRT1

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Excised hepar, spleen, and kidney tissues were homogenized in ice-cold saline with a SCIENTZ glass homogenizer (DY89-1). Further, 200 μL of cell lysis buffer was added to the slurry containing 10 mg of tissue and incubated on ice for 15 min. Then, the supernatant was separated by centrifugation (12000 rpm for 10 min at 4°C) and stored at −20°C. Protein concentrations were determined by BCA assay kit. After SDS-PVDF, proteins were transferred from gel to nitrocellulose membranes. Membranes were blocked in 5% no fat dried milk in TBST (1.65 mL of 20% Tween was added to 700 mL TBS) for 1 h and then incubated overnight with the specific antibody of the AMPK (Ab32047, Abcam, UK) and SIRT1 (Ab12193, Abcam, UK). After incubation with the relative second antibody, immunoreactive bands were quantified using imaging system (EUV-LDUV, Korea Biotech). Values were corrected with the absorbency of the β-actin (4957 CST, Cell Signaling, China).
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10

Immunohistochemistry of Cochlear AMPK

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Cochlear paraffin sections were deparaffinized with xylene and rehydrated in ethanol at graded concentrations. Rinsed in 3% hydrogen peroxide for 10 minutes and block solution for 30 minutes at room temperature. Then immersed in the following primary antibodies in a wet box at 4 °C overnight: anti-p-AMPKα (2535, Cell Signaling Technology Inc., Beverly, MA, USA) at 1:100, anti-AMPKα1 (ab32047, Abcam, Cambridge, England, UK) at 1:200 and anti-AMPKα2 (ab3760, Abcam, Cambridge, England, UK) at 1:100, respectively. Then incubated in the secondary antibodies HRP-labeled goat anti-rabbit IgG (A0208, Beyotime, Shanghai, CN) for 30 minutes in darkness at room temperature. The peroxidase reaction was visualized by using diaminobenzidine (DAB) reagent. The slides were finally dehydrated, cleared and mounted with coverslips.
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