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23 protocols using sunrisetm microplate reader

1

DPPH Radical Scavenging Activity Assay

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The DPPH radical scavenging activity of the extracts and compounds were measured as described by Kirigaya et al. [23 (link)] with slight modifications. Twenty microliters of each extract were mixed with 80 µL of the 0.2 mM DPPH radical methanolic solution. After incubation at 37 °C for 30 min in darkness, the absorbance of the mixture was measured at 515 nm using a SunriseTM microplate reader (Tecan Group Ltd., Männedorf, Switzerland). To evaluate the radical scavenging activity of Compounds 13, each compound was dissolved in 70%ethanol (v/v) at concentrations of 0.0125–1.000 mg/mL. For extracts, DBP and DBF, they were dissolved in 70% ethanol (v/v) at concentrations of 0.125–10.000 mg/mL. L-ascorbic acid in 70% ethanol (v/v) was used as a positive control at concentrations of 0.0125–0.1000 mg/mL. The effective concentrations of the compounds or extracts required to scavenge DPPH radical by 50% (IC50) were obtained by a linear regression analysis of the dose–response curve plotting between %inhibition and concentrations. The DPPH radical scavenging activity at every concentration of each compound or extract was documented in Table S1.
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2

Quantification of Bacterial Biofilm Formation

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Two-hundred microliters of the standardized inoculum (1-5x107 CFU/ml) were inoculated in each well of a 96 well, flat-bottom, polystyrene microtiter plate (Falcon BD, Corning, NY, USA), and incubated statically at 37°C. Following 24 and 96 h-incubation, microtiter plate was washed twice with 200 μl sterile PBS, fixed (60°C, 1 h) and stained (room temperature, 5 min) with 200 μL of 1% crystal violet modified according to Hucker et al. (Hucker, 1921 (link)). Wells were then washed with tap water until complete removal of unbound stain, then air-dried (37°C, 30 min). Biofilm samples were destained with 200 μl of 33% glacial acetic acid, the acetic acid solution was transferred to another microtiter plate, and finally spectrophotometrically measured (OD492) by SUNRISETM microplate reader (Tecan Group Ltd, Männedorf, Switzerland).
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3

Cytotoxicity Assay for p53 Isogenic Cell Lines

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p53+/+ and p53−/− HCT116 cells were seeded at a density of 5 × 103 cells per well in a 96-well plate. After a 24-h treatment with oxaliplatin (0–2 μM) or luteolin (5 or 25 μM) in the absence or presence of 1 μM oxaliplatin, the medium was removed, and then 100 μL of phosphate-buffered saline (PBS) and 10 μL of CCK-8 solution were added to each well. A blank control of 10 μL of the CCK-8 solution added to 100 μL PBS alone, was included. The plate was incubated for 1 h, and absorbance was measured at 450 nm using a SunriseTM microplate reader (Tecan Group Ltd., Männedorf, Switzerland).
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4

ABTS+ Radical Scavenging Assay for Antioxidants

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The radical cations were prepared by mixing a 7 mM ABTS+ stock solution in water with 2.45 mM potassium persulfate and stored in the dark for 12–16 h at room temperature. The ABTS+ solution was diluted with absolute ethanol to an absorbance of 0.7 ± 0.02 at 734 nm before use. In a 96-well plate, 20 µL of each extract was mixed with an 80 µL ABTS+ solution. Measurements were taken at 734 nm using a SunriseTM microplate reader (Tecan Group Ltd.). To evaluate the radical scavenging activity of Compounds 13, each compound was dissolved in 70% ethanol (v/v) at concentrations of 0.0125–1.000 mg/mL. L-ascorbic acid in 70% ethanol (v/v) was used as a positive control at concentrations of 0.0125–0.1000 mg/mL. The ABTS+ radical scavenging activity of the DBP and DBF extracts dissolved in 70% ethanol (v/v) at concentrations of 0.125–10.000 mg/mL. The effective concentrations of the compounds or extracts required to scavenge ABTS+ radical by 50% (IC50) were obtained by a linear regression analysis of the dose–response curve plotting between %inhibition and concentrations. The ABTS+ radical scavenging activity at every concentration of each compound or extract was documented in Table S2.
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5

Quantification of Mouse Serum Chemerin

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Serum levels of mouse chemerin were examined using enzyme-linked immunosorbent assay (ELISA) according to the manufacturer’s instruction (#DY2325, Bio-Techne, USA). In brief, 100 µL diluted serum (1:500 dilution) was added as samples. Samples and standards were then incubated at room temperature for 120 min with gentle shaking. After washing three times, detection antibodies were added and incubated at room temperature for another 120 min. After washing three times, Streptavidin-HRP was added and set for 20 min at room temperature with gentle shaking. After washing five times, the substrate reagent was added in the dark with gentle shaking. After 20 min of incubation, stop solution was added, and the absorption was read at 450 nm with wavelength correction at 570 nm immediately with SunriseTM microplate reader (Tecan Group, Männedorf, Switzerland) and analysed by MagellanTM software (Tecan Group, Switzerland).30 (link)
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6

Assessing HepG2 Cell Viability under Normoxia and IH

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HepG2 cells (2.5 × 104 cells/100 µL in 96-well plate) were incubated at 37 °C over night and the medium was replaced with DMEM+10% FCS just before normoxia/IH exposure. After a 24-h treatment of normoxia or IH, the viable cell numbers were determined by a Cell Counting kit-8 (Dojindo Laboratories, Mashiki-machi, Japan) according to the manufacturer's instructions. Briefly, WST-8 (2-(2-methoxy-4-nitrophenyl)−3-(4-nitrophenyl)−5-(2,4-disulfophenyl)−2H-tetrazolium monosodium salt) solution was added to cells in 96-well plates, and the cells were incubated at 37 °C for 30 min. The optical density of each well was read at 450 nm (reference wave length at 650 nm) using a SunriseTM microplate reader (Tecan, Männedorf, Switzerland), as described [14] (link), [20] .
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7

Viability Assessment of MKN-45 Cells Using miR-143

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The effects of miR-143 replacement on the viability of the MKN-45 cells were assessed by MTT assay. For this purpose, 8×103 cells (vec- and vec + cells) were cultured in 96-well plates in triplicates. Then, 4 days later, the cells were treated with 50 μL of MTT solution (2 mg/mL; Lot no. DU21373R2; Bio Basic, Canada) at 37°C for 4 h. Then, 200 ml of dimethyl sulfoxide was used to dissolve the resulting formazan.13 (link)
After incubation at 37°C for 30 minutes, absorbance was estimated at a test wavelength of 570 nm and a reference wavelength of 620 nm. using a SunriseTM microplate reader (Tecan, Switzerland).
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8

Cell Viability Assay with G0S2 siRNA

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G0S2 siRNA-transfected cells (7×103 cells/well) were seeded in 96-well cell culture plates. After stabilization for 48 h, 10 μL of D-PlusTM CCK solution was treated to each well, followed by incubation at 37°C for 2 h. The formed formazan dyes were quantified by measuring the absorbance at 450 nm with a SunriseTM microplate reader (Tecan, Männedorf, Switzerland).
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9

Evaluating Cell Proliferation Capacity

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The capacity of cellular proliferation was assessed with 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) MTT assay. Two weeks after the cell transfection, the cells (approximately 2 × 103 cells per well) were seeded into 96-well culture plates for four days. The MTT (Sigma, Taufkirchen, Germany) at a concentration of 2 mg/ml was added to the wells and stayed for 4 h at 37 °C. Afterward, 200 µl of dimethyl sulfoxide (DMSO) was added for 30 min at 37 °C to solubilize the crystals. The absorbance was determined with a SunriseTM microplate reader (Tecan, Switzerland) at 570 nm (Montazami et al., 2015[27 (link)]). Each experiment was repeated three times.
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10

Cell Proliferation Assay by CellTiter 96

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Sixty percent confluent cells were released from culture flasks by trypsin, washed with PBS, and seeded into 96-well plates at 5 × 104 cell/ml in culture medium. After incubation at 37 °C for various times, cell proliferation was analysed by the CellTiter 96 AQueous Non-Radioactive Cell Proliferation kit according to the manufacture’s protocols. The plates were read at 492 nm with reference at 595 nm by a SunriseTM microplate reader (Tecan, Männedorf, Switzerland).
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