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15 protocols using ae31e

1

UV-Induced Rupture of Rhodamine-Loaded Particles

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The formulations were loaded with Rhodamine to study the rupture of the systems upon exposure to UV light. Rhodamine was dissolved in the CS solution in the preparation step and the particles were characterized. A drop of a solution of ethanol/water (50:50) was added to each formulation on a slide and covered with a coverslip and analyzed by fluorescence microscope (Motic AE31E, USA). The formulations were illuminated by UV light at λ~370 nm. The fluorescence of Rhodamine was detected after 30 min of illumination at λ~520 nm. Fluorescent intensities of each sample were normalized and evaluated using ImageJ software.
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2

Calcite Seed-Induced Crystallization Monitoring

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The crystallization process with and without calcite seeds was monitored with an optical microscope (Motic, AE31E). The crystallization reaction was performed in a 96-well plate (sample volume: 200 μL). The objectives used were 10x (0.25 NA) for crystallization without seeds, and 20x (0.3 NA) for crystallization with seeds. Higher magnification was used for the seeded samples due to the small size of the calcite seeds. Images were recorded with a Moticam 5.0.
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3

Comparative Analysis of Progeria and Healthy Fibroblasts

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The two utilised cell lines of human fibroblast cells for this experiment have been obtained from Coriell Cell Repository, USA. A control cell line from 13 years female with normal genotype, GM01651, in addition to 13 years male with progeria, AG03513.
Progeria cells were cultured in triplicates of 6-well plates VWR in a prewarmed medium 1:1 of (DMEM, 15% Fetal bovine serum (FBS), Gibco, United States, 1% penicillin and streptomycin solution(P/S), Corning, United States) and (MEM, 15% FBS, 1% Penicillin and streptomycin solution and 1 ml/100 ml non-essential amino acids (MEM NEAA), 100X, Gibco, United States) while the healthy cells were cultured in DMEM, 15% FBS, 1% P/S. The cells were incubated in a humidified atmosphere 5% CO2 incubator, Panasonic, Japan, at 37 °C and checked with the light microscope, Motic, AE31E, United States, until they reached 90-70% confluent.
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4

Optical Microscopy Imaging Protocol

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Images and videos were taken by a standard optical microscope (Leica DM2500P or MOTIC AE31E) with a digital camera (PCO.edge). Confocal images were obtained using a Nikon A1R confocal microscope. Excitation of the sample was achieved by a 488 nm laser.
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5

Stomatal Aperture Analysis of Transgenic Plants

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Leaves of 2-week-old TaNHX2 and TaGAD1 transgenic lines and wild-type plants were collected and incubated in stomatal incubation solution [0.05 M KNO3/10 mM, MES/50 μM CaCl2 (pH = 6.15)] under light conditions (300 to 500 μmol·m−2·s−1, 25°C) for 1.5 hours or darkness for 1 hour. The leaves were then exposed to air conditions for drought treatment for 10 min or pretreated with GABA. Subsequently, the samples were incubated in the continuous dark, light, light-to-dark, or dark-to-light transition for 30 min or 1 hour. Then, the adaxial sides of the leaf epidermis were peeled off using a cutter blade and leaves were then mounted on slides and observed with an inverted microscope (AE31E, Motic, China), and the stomatal aperture (width/length) was analyzed using the Motic Images Plus 3.0(×64). Two images for each leaf, two leaves for each plant, and five plants for each genotype were used for analysis.
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6

Myoblast Differentiation with Lactate

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The murine myoblast cell line C2C12 was purchased from National Biomedical Experimental Cell Resource Bank (Beijing, China). Myoblasts were grown at 37 °C in DMEM (high glucose, HyClone) culture medium containing 10% fetal bovine serum (Biological Industries), 100 units/mL penicillin, and 100 μg/mL streptomycin in a humidified atmosphere (5% CO2). When the cells reached 85–90% confluence, the differentiation of myoblasts was induced to form myotubes by changing the culture medium to DMEM medium containing 2% horse serum, 100 units/mL penicillin and 100 μg/mL streptomycin. Fresh differentiation medium was changed daily until the cells were harvested for analysis. Sodium lactate (#71718, Sigma–Aldrich, Shanghai, China) was added in either the culture medium or the differentiation medium at a final concentration of 5 mM. The observation of morphologies characteristics was carried out with an inverted microscope at 20× magnification (Motic, AE31E, Xiamen, China).
The cells cultured in the DMEM media with and without lactate supplementation were defined as the Lac and Con groups of myoblasts, respectively. Similarly, the cells differentiated in the differentiation media with and without lactate supplementation were defined as the Lac and Con groups of myotubes, respectively.
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7

Optical Investigation of Precipitation

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Simultaneously to global pH measurements, the precipitation process of a parallel sample in a 96-well plate was investigated with an optical microscope (Motic, AE31E, Objective 20× 0.3 NA). Images were taken with a Moticam 5.0.
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8

3D Microsphere Colonization on PLA Fiber Membranes

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Fiber-spun membranes of PLA 10% (w/v) were synthesized by air-jet spinning, as reported previously [26 (link)], onto the 12 mm cover glass. Previously, to seed the 3D microspheres, the fiber membrane was sterilized by immersion in ethanol/antibiotic solution for 30 min and air-dried under the flow cabinet. For evaluating the colonization, after 24 h of microsphere formation by a magnetic levitation technique, two microspheres of DP-MSC and hFOB were seeded in the center of the fiber-spun membrane and incubated for 3 and 7 days. At the prescribed time, the evaluation of the interaction of the 3D microsphere above the surface was evaluated by a Live/Dead Cell Imagining kit (Invitrogen) following the manufacturer’s instructions and was observed under an epifluorescence microscope (model AE31E; MOTIC, Schertz, TX, USA). DAPI was used for observing the nucleus of the cells. The experiments were conducted in triplicate.
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9

Microscopic Evaluation of Fungal Hyphae Responses to Bioactive Compounds

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A mycelial disk (5 mm diameter) was taken from the periphery of the colony grown on PDA mediums containing EC50 (0.0016 mM) of compound 2 and EC50 (0.0030 mM) of compound 5c respectively. The samples were inoculated to microscope slides on the first day, and observed the mycelial morphology by optical microscope (Motic AE31E) on the third day, respectively. Scanning electron microscopy observations on the hyphae of S. sclerotiorum were conducted according to the method of previous studies.32 (link) A mycelial disk (5 mm diameter) was taken from the periphery of the colony grown on PDA mediums containing EC50 (0.0016 mM) of compound 2 and EC50 (0.0030 mM) of compound 5c respectively. Samples were fixed in 2.5% glutaraldehyde for 24 h at room temperature, and were washed for 15 min with 0.1 mol L−1 phosphate buffer for three times, followed another 1 h fixation in 1% OsO4 solution. The specimens were dehydrated in a grated ethanol series (20%, 50%, 80% and 100% respectively, 5 min for each alcohol dilution). After drying at critical point and gold coating, SEM observations were carried out with a scanning electron microscope (Hitachi, S-3400N, Japan) at an accelerating voltage of 15.0 kV.
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10

Extracellular Nucleic Acids in Biofilm Matrix

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To identify the presence of eDNA and eRNA in the biofilm matrix, selected fluorescent dyes were used: Sytox Green (Molecular Probes, Eugene, OR) at a final concentration of 1 μM for DNA and RNA staining, Quant-iT PicoGreen (Invitrogen, Waltham, MA) at a 200-fold dilution of concentrated dye for dsDNA staining, and SYTO RNA Select (Invitrogen, Waltham, MA, USA) at a concentration of 500 nM for RNA identification. Biofilms were imaged using AE31E (Motic, Barcelona, Spain), IX73 (Olympus, Tokyo, Japan), and DMI6000B (Leica, Wetzlar, Germany) fluorescence microscopes. Additionally, the presence of eDNA and eRNA in the biofilm was confirmed by nuclease treatments. After 48 hours of biofilm culturing in 96-well plate (105 cells/ml), DNase I (a final concentration of 20 U/ml; Thermo Scientific, Waltham, MA) or RNase A (a final concentration of 0.2 mg/ml; Thermo Scientific, Waltham, MA) in a reaction buffer containing MgCl2 (Thermo Scientific, Waltham, MA) were added to RPMI 1640 medium. The incubation with nucleases was carried out for 1.5 h. After the digestion, extracellular nucleic acids were stained with Sytox Green and the fluorescence was measured using a Biotek Synergy H1 microplate reader (excitation: 485 nm, emission: 528 nm). Biofilms not treated with nucleases served as a reference.
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