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12 protocols using fitc pll

1

Measuring Bacterial Membrane Surface Charge

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To measure bacterial membrane surface charge, we carried out a fluorescein isothiocyanate-labelled poly-L-lysine- (FITC-PLL) (Sigma) binding assay (Kintses et al., 2019 (link); Rossetti et al., 2004 (link)). FITC-PLL is a polycationic molecule that binds to an anionic lipid membrane in a charge-dependent manner and is used to investigate the interaction between cationic peptides and charged lipid bilayer membranes. The assay was performed as previously described (Kintses et al., 2019 (link)). Briefly, bacterial cells were grown overnight in LB medium, and then centrifuged, and washed twice with 1× phosphate-buffered saline (PBS) buffer (pH 7.4). The washed bacterial cells were re-suspended in 1× PBS buffer to a final OD600 of 0.1. A freshly prepared FITC-PLL solution was added to the bacterial suspension at a final concentration of 6.5 µg/ml. The suspension was incubated at room temperature for 10 min, and pelleted by centrifugation. The remaining amount of FITC-PLL in the supernatant was determined fluorometrically (excitation at 500 nm and emission at 530 nm) with or without bacterial exposure. The quantity of bound molecules was calculated from the difference between these values. A lower binding of FITC-PLL indicates a less net negative surface charge of the outer bacterial membrane.
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2

Measuring Bacterial Membrane Surface Charge

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To measure bacterial membrane surface charge, we carried out a fluorescein isothiocyanate-labeled poly-L-lysine (FITC-PLL) (Sigma) binding assay. FITC-PLL is a polycationic molecule that binds to an anionic lipid membrane in a charge-dependent manner and is used to investigate the interaction between cationic peptides and charged lipid bilayer membranes (Rossetti et al., 2004 (link)). The assay was performed as previously described (Spohn et al., 2019 (link); Kintses et al., 2019 (link)). Briefly, bacterial cells were grown overnight in MHB medium, centrifuged, and washed twice with 1× PBS buffer (pH 7.4). The washed bacterial cells were resuspended in 1× PBS buffer to a final OD600 of 0.1. A freshly prepared FITC-PLL solution was added to the bacterial suspension at a final concentration of 6.5 µg/ml. The suspension was incubated at room temperature for 10 min and pelleted by centrifugation. The remaining amount of FITC-PLL in the supernatant was determined fluorometrically (excitation at 500 nm and emission at 530 nm) with or without bacterial exposure. The quantity of bound molecules was calculated from the difference between these values. A lower binding of FITC-PLL indicates a less net negative surface charge of the outer bacterial membrane.
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3

Evaluating Bacterial Surface Charge

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To evaluate bacterial surface charge, we performed a fluorescein isothiocyanate-labeled poly-L-lysine (FITC-PLL) (Sigma) binding assay. In brief, FITC-PLL is a polycationic molecule that binds to anionic lipid membrane in a charge-dependent manner and is used to investigate the interaction between cationic peptides and charged lipid bilayer membranes70 (link). The assay was performed as previously described25 (link),71 (link). Briefly, bacterial cells were grown overnight in MS medium, centrifuged and washed twice with 1X PBS buffer (pH 7.4). The washed bacterial cells were re-suspended in 1× PBS buffer to a final OD600 of 0.1. A freshly prepared FITC-PLL solution was added to the bacterial suspension at a final concentration of 6.5 µg/ml. The suspension was incubated at room temperature for 10 min, and pelleted by centrifugation. The remaining amount of FITC-PLL in the supernatant was determined fluorometrically (excitation at 500 nm and emission at 530 nm) with or without bacterial exposure. The quantity of bound molecules was calculated from the difference between these values. A lower binding of FITC-PLL indicates a less net negative surface charge of the outer bacterial membrane.
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4

Evaluating Bacterial Cell Surface Charge

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To investigate changes in bacterial cell surface charge, we performed a fluorescein isothiocyanate-labeled poly-L-lysine (FITC-PLL) (Sigma) binding assay. FITC-PLL is a polycationic molecule that is widely used to study the interaction between cationic AMPs and charged lipid bilayer membranes73 . In brief, cells were grown overnight in MS medium and then washed twice with 1× phosphate-buffered saline (PBS) buffer. The cells were suspended in the PBS buffer to a final OD600 of 0.1. The suspension was incubated with 6.5 µg/mL FITC-PLL for 10 min and centrifuged at 5500 r.p.m. for 5 min. The amount of FITC-PLL in the supernatant remaining after bacterial exposure (or no exposure in case of the control) was determined fluorometrically (excitation at 500 nm and emission at 530 nm). The quantity of FITC-PLL molecules bound to the bacterial surface was calculated from the difference between the amount of FITC-PLL in the control (no exposure) and the amount of unbound FITC-PLL (bacterial exposure). The lower the amount of bound poly-L-lysine, the less negatively charged the cell surface is.
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5

Quantifying mcr-1-mediated Colistin Resistance

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Fluorescent isothiocyanate-labelled poly-L-lysine (FITC-PLL, Sigma) binding assays were used to determine mcr-1 activity. Positively charged FITC-PLL can bind Gram-negative outer membrane in a charge dependant manner due to negative charges on lipid A. mcr-1 activity reduces these negative charges allowing estimations of mcr-1 activity by measuring cell fluorescence. Overnight cultures of constructed and/or control MG1655 were washed and 1X PBS buffer to a final OD595 of 0.1. FITC-PLL solution was added to re-suspended cells (5 µg/ml) and samples were incubated at room temperature for 12 min. Following centrifugation (6000 g, 5 min), fluorescence measurements (Ex-500 nm/Em-530 nm) of supernatants were compared with PBS controls to determine the proportion of bacteria-bound dye.
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6

Surface Charge Profiling of S. aureus

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A FITC-poly-L-lysine (FITC-PLL) binding assay was used to determine the relative surface charge of the bacteria. Overnight S. aureus cultures where diluted to an OD600nm 0.5 in 1 ml of PBS. These suspensions were subsequently incubated with 80 μg/ml FITC-PLL (MW 15,000–30,000; Sigma) for 10 min at room temperature in the dark. Cells were then washed three times in 1 ml of PBS by three rounds of centrifugation (16,000 × g for 1 min). Fluorescence was visualized by using a PHERAstar (BMG Labtech) plate reader (excitation 485 nm: emission 525 nm). The FITC-poly-L-lysine binding assay was compared with another commonly used method to investigate differences in surface charge, a cytochrome C binding assay. For the cytochrome C binding assay, overnight cultures were normalized to an OD600nm of 8. The bacterial suspensions were washed twice in MOPS buffer (20 mM pH 7.0) and finally resuspended in 200 μl of MOPS buffer. Samples were then combined with 50 μl of cytochrome C (equine heart, 2.5 mg/ml in MOPS buffer) and incubated for 10 min at room temperature. Finally, samples were pelleted (16,000 × g for 1 min) and 200 μl of supernatant read for absorbance at Abs530nm using a SUNRISE Tecan microplate reader.
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7

Bacterial Membrane Surface Charge Assay

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To measure bacterial membrane surface charge, we carried out a fluorescein isothiocyanatelabelled poly-L-lysine (FITC-PLL) (Sigma) binding assay 63, 64 . FITC-PLL is a polycationic molecule that binds to an anionic lipid membrane in a charge-dependent manner and is used to investigate the interaction between cationic peptides and charged lipid bilayer membranes.
The assay was performed as previously described 63 . Briefly, bacterial cells were grown overnight in LB medium, and then centrifuged, and washed twice with 1X PBS buffer (pH 7.4).
The washed bacterial cells were re-suspended in 1× PBS buffer to a final OD600 of 0.1. A freshly prepared FITC-PLL solution was added to the bacterial suspension at a final concentration of 6.5 µg/ml. The suspension was incubated at room temperature for 10 min, and pelleted by centrifugation. The remaining amount of FITC-PLL in the supernatant was determined fluorometrically (excitation at 500 nm and emission at 530 nm) with or without bacterial exposure. The quantity of bound molecules was calculated from the difference between these values. A lower binding of FITC-PLL indicates a less net negative surface charge of the outer bacterial membrane.
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8

Multifunctional Nanoparticle Synthesis

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2-Hydroxy-4′-(2-hydroxyethoxy)-2-methylpropiophenone (I2959), heparin, FITC-labeled poly-L-lysine (PLL-FITC, Mw 30-70 kDa), polyvinylpyrrolidone (PVP, Mw ~40 kDa), rhodamine B, 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC), N-hydroxysulfosuccinimide (NHSS), and cystamine dihydrochloride, heparin, 1,4-dithiothreitol (DTT), lipase, and rapamycin were purchased from Sigma-Aldrich. PBS was purchased from Sango Biotech (Shanghai, China). Poly(D,L-lactide-co-glycolide) (PLGA, LA : GA = 75 : 25, Mn ~65 kDa) and PLGA diacrylate (PLGA-DA, LA : GA = 75 : 25, Mn ~65 kDa) were purchased from Jinan Daigang Biomaterial Co., Ltd. (Jinan, China). Annexin V-FITC/PI kit was purchased from Thermo Fisher Scientific Inc. Recombinant human VEGF165 was purchased from PeproTech (Rocky Hill, USA). The deionized (DI) water (>18 MΩ cm) used in all experiments was provided by a Millipore Milli-Q water purification system. All materials were used as received without further purification.
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9

In Vitro Myelination Assay for RRMS

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For in vitro myelination assay, O4+ RRMS and control hiOL were purified by flow cytometry at day 21 of differentiation. Afterwards, 1 × 105 O4+ hiOL were seeded in DM onto aligned nanofibers (Nanofiber solutions) that were coated with 1 µg/mL PLO and 5 µg/mL Laminin LN211 (Biolamina) beforehand. For staining of nanofibers, coating was performed by replacing PLO with 100 µg/mL PLL-FITC (Sigma). Half of the medium was changed every other day. After 7 days, cells were fixed and stained for MBP. A previously published heuristic algorithm was used for quantification [66 (link)].
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10

Microcontact Printing of Fluorescent Patterns

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Microcontact printing was performed as previously described [40 (link)]. Briefly, PDMS stamps were coated with FITC-conjugated poly-l-lysine (PLL-FITC, 1 mg/mL in DI water, Sigma, St. Louis, MO, USA), and were brought in conformal contact with a cleaned glass coverslip with (20 g) and without extra weight. These patterned fluorescent dots were imaged using an optical microscope (Nikon, Tokyo, Japan), and printed pattern measurements were calculated using ImageJ.
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