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2 protocols using phosphorylated p iκbα

1

Western Blot Analysis of Circadian and Inflammatory Proteins

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Protein of cultured cells and liver tissue was extracted using RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 0.1% SDS, 1% Triton X-100, 0.5% sodium deoxycholate containing protease and phosphatase inhibitors). Protein samples (40 μg) were subjected to electrophoresis on 10% SDS-polyacrylamide gels and transferred to a nitrocellulose (Amersham Protran Supported 0.45 NC, GE healthcare). After blocking with 0.5% dry milk in PBS-Tween 0.1%, the membranes were probed with antibodies against GR (1:500, Santa Cruz Biotechnology, sc-1004), HSP90α/β (F-8) (1:1000, Santa Cruz Biotechnology, sc-13119), REV-ERBα (1:200, Santa Cruz Biotechnology, sc-100910), BMAL1 (1:500, Ripperger and Schibler, 2006 (link)), NF-κB p65 (1:200, Santa Cruz Biotechnology, sc-109), IκBα (1:200, Santa Cruz Biotechnology, sc-371), phosphorylated (p-)IκBα (1:200, Santa Cruz Biotechnology, sc-8404), tubulin (1:1000, Abcam, ab 15246) or LAMINB1 (1:500, Santa Cruz Biotechnology, sc-30264) overnight at 4°C. Anti-rabbit-IgG, mouse-IgG and goat-IgG antibody conjugated to horseradish peroxidase (HPR) was used as a secondary antibody. Detection of the immune complexes was performed using Western Bright Quantum system (Advansta) and quantification was done with the Quantity One analysis software (BioRad).
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2

Cell Signaling Pathway Analysis

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We purchased RSV, phorbol myristate acetate (PMA), 3-[4,5-dimetylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT), dimethyl sulfoxide, calcium ionophore, and fetal bovine serum (FBS), from Sigma-Aldrich Corp. (St. Louis, MO, USA); TMB substrate from (Pharmingen, San Diego, CA, USA); Power SYBR® Green PCR master mix from Applied Biosystems (Warrington, UK); penicillin/streptomycin mixture from Gibco BRL (Grand Island, NY, USA); TSLP antibodies from R&D Systems (Minneapolis, MN, USA); RIP2, caspase-1, GAPDH, phosphorylated (p)IκBα, and NF-κB p65 antibodies from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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