The largest database of trusted experimental protocols

Fx96 real time pcr detection system

Manufactured by Bio-Rad
Sourced in Finland

The FX96™ Real-Time PCR Detection System is a laboratory instrument designed for the amplification and detection of nucleic acid sequences. It utilizes real-time PCR technology to monitor the progress of DNA or RNA amplification during the thermal cycling process.

Automatically generated - may contain errors

3 protocols using fx96 real time pcr detection system

1

Quantitative real-time PCR analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol reagent protocol (Life Technologies), and RNA was quantitated by spectrophotometry at 260 nm using a NanoDrop ND-1000 (NanoDrop Technologies, Wilmington, DE, USA). Then cDNA synthesis was performed using the SuperScript First-Strand Synthesis System for real-time PCR (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s protocol. Quantitative PCR analyses for LDHA and HK2 were performed using Assay-on-Demand primers and TaqMan Universal PCR Master Mix reagent (TransGen Biotech, China). Samples were analyzed using an FX96™ Real-Time PCR Detection System (Bio-Rad). The ΔΔCT method was used to quantify relative changes in gene expression as described previously. Expression levels of β-actin were used to normalize the relative expression levels. Each sample was tested at least three times. Primers used for PCR were as follows:
The protocol of real-time PCR were as follows: 1) 94°C for10 minutes, 2) 94°C for 1 minute, 3) 60°C for 30 seconds, 4) 72°C for 1 minute, 5) repeat the steps 1–4, 6) 72°C for 10 minutes, and 7) 4°C forever.
+ Open protocol
+ Expand
2

RNA Extraction and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from cells, explants and snap-frozen ovarian tumors were prepared using TRIzol extraction method (Invitrogen, Carlsbad, CA). The quantity and quality of isolated RNA was determined by NanoDrop (Thermo Fisher Scientific Inc., Waltham, MA, USA) and gel electrophoresis. Before the reverse transcription (RT) reaction 1 μg of total RNA was incubated for 30 min with DNase I (Invitrogen, Carlsbad, CA) at room temperature. The RT reaction was performed with DyNAmo ™ cDNA Synthesis Kit (Finnzymes, Espo. Finland) at 37 °C for 1 h in 20 μl. Quantification of investigated genes was performed with FX96™ Real-Time PCR Detection System, Bio Rad using DyNAmo SYBR Green qPCR kit (Finnzymes). Reaction conditions were: initial denaturation at 95 °C for 10 min followed by 40 amplification cycles at 95 °C for 15 s, 56–60 °C at 45 s and 70 °C at 45 s. At the end of the PCR reaction, melting curve was determined to ensure single product amplification. Amplification products were separated on 1.8% agarose gel and stained with ethidium bromide. Expression levels were normalized to the housekeeping gene peptidylprolyl isomerase (PPIA). The primer sequences and expected product sizes are shown in Supplementary Table S1.
+ Open protocol
+ Expand
3

RNA Extraction and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from cells and snap-frozen LCTs were prepared using TRIzol extraction method (Invitrogen, Carlsbad, CA). The quantity and quality of isolated RNA was determined by NanoDrop (Thermo Fisher Scientific Inc., Waltham, MA, USA) and gel electrophoresis. Before the reverse transcription (RT) reaction 1 µg of total RNA was incubated for 30 min with DNase I (Invitrogen, Carlsbad, CA) at room temperature. The RT reaction was performed with DyNAmo TM cDNA Synthesis Kit (Finnzymes, Espoo, Finland) at 37 °C for 1 h in 20 µl. Quantification of investigated genes was performed with FX96™ Real-Time PCR Detection System, Bio Rad using DyNAmo SYBR Green qPCR kit (Finnzymes, Espoo, Finland). Reaction conditions were: initial denaturation at 95 °C for 10 min followed by 40 amplification cycles at 95 °C for 15 s, 56–60 °C at 45 s and 70 °C at 45 s. At the end of the PCR reaction, melting curve was determined to ensure single product amplification. Amplification products were separated on 1.8% agarose gel and stained with ethidium bromide. Expression levels were normalized to the housekeeping gene peptidylprolyl isomerase (Ppia). The primer sequences and expected product sizes are shown in Table S2.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!