The largest database of trusted experimental protocols

8 protocols using spectramax minimax 300

1

Quantifying Viral Growth Kinetics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Subconfluent BHK-21 cells in 96-well plates were infected with WT or mutant viruses at low MOI (0.2), resulting in conditions where spread through the culture and appearance of CPE and cell death occurred over approximately 2 days. The MOI for WT and mutant viruses was confirmed as equal by immunofluorescence. The appearance of CPE was recorded by capturing transmitted light images of each well every hour postinfection for 36 h using an imaging plate reader (SpectraMax MiniMax 300; Molecular Devices). The surface area covered by cells was automatically calculated for every image using image analysis software (SoftMax Pro; Molecular Devices). As cells died, the surface area covered became less, allowing quantitation of the rate of virus growth through the culture. Data were visualized using GraphPad prism.
+ Open protocol
+ Expand
2

Cell Proliferation Assessment via Ki-67 Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell number was determined over time from transmitted light images using a SpectraMax
miniMax 300 imaging cytometer (Molecular Devices). 5 x 103 cells were
plated in black clear bottom 96-well plates (Costar) and treated 24 h later.
Cell proliferation was determined using Ki-67 staining. Briefly, cells were
cultured for 72 h of culture in assay medium, after which they were
immunostained using a mouse monoclonal antibody against Ki-67 (#556003, BD
biosciences) and a goat anti-mouse IgG1 secondary antibody (Alexa Fluor 488
conjugate, #A-21121, Invitrogen). Fluorescence of Ki-67-positive cells and total
cell number were determined using a SpectraMax miniMax 300 imaging cytometer.
Cell proliferation corresponds to the percentage of Ki-67-positive cells on
total number analyzed using the SoftMax Pro software.
+ Open protocol
+ Expand
3

Evaluating Cell Proliferation and Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For 2D culture, 2×105 cells/well were seeded into a 6-well plate, and XAV939 was added after 24 h. Two hundred microliters of CCK-8 (Dojindo Laboratories, Japan) was added to the cell culture after 0, 1, 2 and 3 days of XAV939 treatment. Absorbance at 450 nm from formazan byproducts was measured using a SpectraMax MiniMax 300 imaging cytometer (Molecular Devices, CA, USA). For 3D cell culture, mixture of agar/SW480 cells were seeded into 96-well plates, and XAV939 was added after 24 h. RPMI-1640 medium was replaced every 48h and incubated for 2, 4 and 6 days. After incubation, the 3D agar cell layer was solubilized with the addition of 50 µl of agar solubilization solution, and cell proliferation was quantified using CyQuant dye and fluorescence at 520 nm. To measure apoptosis, a Muse Annexin V and Dead Cell Assay Kit was used and analyzed with a Muse cell analyzer (Merck Millipore, MA, USA).
+ Open protocol
+ Expand
4

Cell Proliferation Assessment via Ki-67 Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell number was determined over time from transmitted light images using a SpectraMax
miniMax 300 imaging cytometer (Molecular Devices). 5 x 103 cells were
plated in black clear bottom 96-well plates (Costar) and treated 24 h later.
Cell proliferation was determined using Ki-67 staining. Briefly, cells were
cultured for 72 h of culture in assay medium, after which they were
immunostained using a mouse monoclonal antibody against Ki-67 (#556003, BD
biosciences) and a goat anti-mouse IgG1 secondary antibody (Alexa Fluor 488
conjugate, #A-21121, Invitrogen). Fluorescence of Ki-67-positive cells and total
cell number were determined using a SpectraMax miniMax 300 imaging cytometer.
Cell proliferation corresponds to the percentage of Ki-67-positive cells on
total number analyzed using the SoftMax Pro software.
+ Open protocol
+ Expand
5

Quantifying Leishmania Parasite Viability

Check if the same lab product or an alternative is used in the 5 most similar protocols
5 × 105 neutrophils were infected with luciferase-expressing L. (V.) p. strains with different drug-susceptibility phenotypes during 2 h at 34°C at a MOI of 5:1, washed and subsequently incubated for 24 h. Parasite viability after incubation was measured using a luciferase assay system (Promega) according to the manufacturer's instructions. To measure parasite viability in presence or absence of NETs, neutrophils were incubated with or without 10 μg/ml DNase and parasite survival measured by chemi-luminescence as previously described (28 (link)). Chemiluminescence was measured in white, opaque 96-well plates in a plate reader (Molecular Devices, SpectraMax MiniMax 300) at all wavelengths.
+ Open protocol
+ Expand
6

Quantifying Neutrophil Extracellular Trap Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
3 × 105 Neutrophils were seeded on poly-L-Lysine coated coverslips, primed with 25 ng/mL GM-CSF and exposed for 4 h with either L. (V.) p., PMA (Phorbol-12-myristate-13-acetate, Sigma), PMA + DNase (Sigma) or without a stimulus. Subsequently, cells were fixed with 4% PFA (Paraformaldehyde, Sigma) and stained with rabbit anti-human MPO (Dako) primary antibody and Alexa Fluor-488 goat anti-rabbit secondary antibody (Life Technologies). Coverslips were mounted on glass slides using a DAPI containing mounting medium (Molecular Probes) and analyzed by confocal microscopy (ZEISS LSM 510). To quantify NET formation, NETs were counted using fluorescence microscopy in a blinded manner based on at least in three replicates. NET formation was also assessed through the measurement of dsDNA in the supernatant using the Quant-iT PicoGreen kit (Thermo Fisher) by adapting a technique previously described (42 (link)). 2 × 106 neutrophils were incubated for 4 h in X-vivo medium (Lonza) with either L. (V.) p., PMA or PMA + DNase or without stimulus. After incubation, the cell suspensions were centrifuged, and the supernatants were collected and transferred into black 96-well plates (Perkin Elmer). The picogreen dye was added and fluorescence was measured in using a plate reader (Molecular Devices, SpectraMax MiniMax 300) at an excitation wavelength of 480 nm and an emission wavelength of 520 nm.
+ Open protocol
+ Expand
7

Quantitative Analysis of Viral Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed 4 h postinfection with 4% formaldehyde in PBS, permeabilized with 0.1% Triton X-100, and blocked with 0.5% bovine serum albumin (BSA) in PBS. The fixed monolayers were serially incubated with monoclonal antibody 2C2 (specific for FMDV nonstructural protein 3A) at 1:1,000 in block buffer, Alexa Fluor 488-conjugated anti-mouse secondary antibody (Invitrogen) at 1:200 dilution in blocking buffer, and the nuclear counterstain TO-PRO-3 (ThermoFisher Scientific). Immunofluorescence images were captured using an imaging plate reader (SpectraMax MiniMax 300; Molecular Devices). Quantitation of the total number of cells based on TO-PRO-3 fluorescence, number of infected cells based on Alexa Fluor 488 fluorescence, and intensity of signal for each cell was automated by image analysis software (SoftMax Pro; Molecular Devices). Data were visualized using Prism 7 (GraphPad).
+ Open protocol
+ Expand
8

Crystal Violet Cell Viability Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
On day 0, cells at a 70–80% confluence were treated as indicated. At the indicated time points, they were stained with crystal violet, as previously described [65 (link)]. Absorbances were measured at 570 nm on a SpectraMax miniMax 300 imaging cytometer (Molecular Devices, Munich, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!