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3 protocols using non depc treated dnase rnase free water

1

Colorimetric Peroxidase Activity Assay

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All oligonucleotides were from Integrated DNA Technologies, Inc. (Coralville, IA). 2,2′-Azino-bis(3ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), hemin, triton-X100 and HEPES were purchased from Sigma-Aldrich (St. Louis, MO). DMSO was from Fisher Scientific (Hampton, NH). Hydrogen peroxide solution (3%) was from VWR (Radnor, PA). Non-DEPC treated DNase/RNase-free water was from Boston Bio Products (Ashland, MA). GelRed® nucleic acid gel stain was from Biotium (Fremont, CA). All other reagents were of analytical grade.
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2

In Vitro Transcription Protocol

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Oligonucleotides were custom made by Integrated DNA Technologies, Inc. (Coralville, IA) and were used without purification. Non-DEPC treated DNase/RNase-free water was from Boston Bio Products (Ashland, MA). Bsm DNA polymerase, ultra-low range DNA ladder, RiboRuler High Range RNA ladder, Middlebrook 7H9 with OADC, Luria-Bertani (LB) broth, and Ambion Turbo DNA-free DNase kit were obtained from ThermoFisher Scientific (Waltham, MA). Hi-T7 RNA polymerase, Hi-T7 RNA polymerase buffer, ribonucleotide triphosphate (rNTP) mix, and deoxyribonucleotide (dNTP) mixes were purchased from New England BioLabs (Ipswich, MA, United States). GelRed® nucleic acid gel stain was from Biotium (Fremont, CA, United States). N-methylmesoporphyrin IX (NMM) and malachite green were purchased from Sigma-Aldrich (St. Louis, MO, United States). Dithiothreitol (DTT) and ammonium chloride were purchased from Acros Organics (Fair Lawn, NJ, United States). All other reagents were purchased from Fischer Scientific.
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3

NASBA Assay for Nucleic Acid Detection

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Oligonucleotides were custom made by Integrated DNA Technologies, Inc. (Coralville, IA) and were used without purification, except the IPDz substrate, which was HPLC-purified. The NASBA liquid kit was purchased from Life Sciences Advanced Technologies, Inc. (Saint Petersburg, FL). 2,2’-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), hemin, triton-X100 and HEPES were purchased from Sigma-Aldrich (St. Louis, MO). DMSO was from Fisher Scientific (Hampton, NH). Hydrogen peroxide solution (3%) was from VWR (Radnor, PA). Non-DEPC treated DNase/RNase-free water was from Boston Bio Products (Ashland, MA). SeaKem® LE agarose was from Lonza (Basel, Switzerland), GelRed® nucleic acid gel stain was from Biotium (Fremont, CA). RiboRuler Low Range RNA Ladder, Middlebrook 7H9 with OADC, and Ambion Turbo DNA-free DNase kit were obtained from ThermoFisher Scientific (Waltham, MA). All other reagents were of analytical grade. Absorption spectra were measured using NanoDrop OneC UV/Vis spectrometer (ThermoFisher Scientific, Waltham, MA). Amplification reactions were carried out using a C1000 Touch Thermo Cycler (Bio-Rad Laboratories, Inc., Hercules, CA). The amplicons were analyzed in 2% agarose gels supplemented with GelRed using a BioRad horizontal gel electrophoresis system. The gel images were acquired and analyzed using a BioRad GelDoc XR Molecular Imager.
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