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9 protocols using lysine agar

1

Yeast Strain Viability Assay

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The vitality of the strains after 3 months of bottling was carried out using viable cell counts on WL Nutrient Agar (Oxoid, Hampshire, UK) and Lysine Agar (Oxoid, Hampshire, UK) for the differentiation of NCY yeast from S. cerevisiae strain.
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2

Isolation and Identification of Shigella

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MacConkey agar, Xylose Lysine Deosxycholate agar and Selenite F enrichment broth (Oxoid, England) were used for isolation of Shigella. Culture negative specimens on primary solid media were sub-cultured from the enrichment broth to primary solid media to improve recovery of the isolates. All inoculated media were incubated at 37 °C for 18–24 h. After overnight incubation, non-lactose fermenters were further identified by biochemical tests using appropriate media namely: Kligler Iron Agar for carbohydrate fermentation test, Urea agar for the urea utilization test, tryptophan broth for Indole test, Simmon Citrate agar for citrate utilization, Motility agar for motility test, Lysine agar for lysine utilization test (all Oxoid, England).
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3

Enumeration of Microbial Populations in Gioddu

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One mL of each Gioddu sample was added with 9 mL of a sterile peptone water (0.1% peptone, w/v) and homogenized by Stomacher 400 Circulator apparatus (VWR International PBI, Milan, Italy) at 260 rpm for 3 min. The homogenates (dilution 10 -1 ) were additionally ten-fold diluted and subjected to viable counts of lactic acid bacteria (LAB) (lactobacilli and lactococci), total and non-Saccharomyces yeasts. The enumeration of lactobacilli and lactococci was performed on de Man Rogosa and Sharpe (MRS) Agar (WVR, International, Leuven, Belgium) and M17 agar (Merck KGaA, Darmstadt, Germany), respectively, using pour plate method. The agar plates were incubated at 37°C under anaerobic conditions (Gas-Pack system, Oxoid). Both growth media were supplemented with 250 mg/L of cycloheximide to inhibit yeast growth.
Total viable yeasts were enumerated on WL-nutrient agar (Oxoid) and non-Saccharomyces yeasts on Lysine agar (Oxoid) after incubation at 25°C for 72 h. Both media were supplemented with 100 mg/L of chloramphenicol to inhibit the bacterial growth. The results were expressed as colony forming units (CFU) per mL of sample ± standard deviations.
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4

Monitoring T. delbrueckii Yeast Growth

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The biomass evolution was monitored during the fermentation process using viable cell counts on WL Nutrient Agar (Oxoid, Hampshire, UK) and Lysine Agar (Oxoid, Hampshire, UK). Lysine Agar is a medium unable to support the growth of S. cerevisiae [20] for the differentiation of T. delbrueckii yeast from S. cerevisiae US-05 starter strain.
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5

Yeast Viability Monitoring in Bottled Beverages

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The vitality of the strains after 3 months of bottling was carried out using viable cell counts on WL Nutrient Agar (Oxoid, Hampshire, UK) and Lysine Agar (Oxoid, Hampshire, UK). Lysine Agar is a medium unable to support the growth of S. cerevisiae (Lin, 1975) (link) for the differentiation of non-Saccharomyces yeast from S. cerevisiae strain. The media were incubated at 25 • C for 2-3 days.
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6

Yeast Viability Monitoring in Bottled Beverages

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The vitality of the strains after 3 months of bottling was carried out using viable cell counts on WL Nutrient Agar (Oxoid, Hampshire, UK) and Lysine Agar (Oxoid, Hampshire, UK). Lysine Agar is a medium unable to support the growth of S. cerevisiae (Lin, 1975) (link) for the differentiation of non-Saccharomyces yeast from S. cerevisiae strain. The media were incubated at 25 • C for 2-3 days.
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7

Fermentation Dynamics of T. delbrueckii and S. cerevisiae

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From preliminary screening T. delbrueckii DiSVA 254 was selected and used in the pure and mixed fermentations with the S. cerevisiae US-05 starter strain at different S. cerevisiae to T. delbrueckii ratios (i.e., 1:1, 1:10, 1:20, respectively). A batch of 1,500 l of malted barley wort for the production of American Amber Ale was used in this study. Its main analytical characters were: pH 5.47; specific gravity 12.7 °Plato. The fermentation potential of the selected strain was evaluated in fermentation trials carried out at 20 °C in flasks containing 500 ml wort under sterile conditions. The flasks were locked with a Müller valve containing sulphuric acid, to allow only CO 2 to escape from the system. Pre-cultures were grown in 10% malt extract at 20 °C for 48 h. The fermentation kinetics were monitored by measuring the weight loss of the flasks due to the CO 2 evolution, which was followed to the end of the fermentation (i.e., constant weight for 3 consecutive days). The growth kinetics were monitored using viable cell counts on WL Nutrient Agar (Oxoid, Hampshire, UK) and Lysine Agar (Oxoid, Hampshire, UK) a selective medium unable to support the growth of S. cerevisiae (Lin, 1975) , for differentiation of the T. delbrueckii yeast from the S. cerevisiae starter strain. The fermentations were carried out in duplicate trials under static conditions.
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8

Analyzing Mixed Yeast Fermentation Protocols

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The yeast strains used in this study were the commercial S. cerevisiae strain Lalvin EC1118 (Lallemand Inc.) and Z. florentina strain 42 from the Yeast Culture Collection of the Department of Agricultural Biotechnologies (GESAAF, University of Florence, Italy), which were maintained at -80 °C. The Z. florentina strain 42 was identified by D1-D2 domain analysis.
After revitalisation, these two yeast strains were routinely cultured on YPD agar (20 g/L glucose, 20 g/L peptone, 10 g/L yeast extract, 20 g/L agar) at 27 °C for 48 h, and maintained at 4 °C for the duration of study. The media used to evaluate viable cell counts during mixed fermentations were WL nutrient agar (Oxoid, Hampshire, UK) and lysine agar (Oxoid, Hampshire, UK). WL nutrient agar plates were used to differentiate the fermenting yeast from must samples (Pallman et al. 2001) , and lysine agar for the viable counts of the non-Saccharomyces yeast population. The viable yeast cells in the single culture fermentations of S. cerevisiae and Z. florentina (controls)
were determined using YPD agar plates.
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9

Yeast Isolation from Grape Juice Fermentation

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One hundred millilitres of grape juices was poured into sterile bottles and left to ferment at 28°C ('fermented musts') until no further effervescence could be seen and no further reduction in glucose concentration was measured using a Keto Diabur Test (Roche, Mannheim, Germany). We plated aliquots of grape juices and fermented musts, eventually serially diluted in duplicate with sterile peptone 1 g l À1 , on WL Nutrient Agar (Oxoid, Basingstoke, England) (Pallmann et al. 2001) and on Lysine Agar (Oxoid) (Fowell 1965) , with Diphenyl 0Á1 g l À1 to slow-down moulds (Kurtzman et al. 2011) .
After 5 days at 28°C, we analysed plates with 20-200 colonies. When the number of colonies from undiluted samples was low, we analysed a high number of plates. We streaked yeasts in single colonies on WL Nutrient Agar to better recognize their morphotypes. Based on colony morphology on WL Nutrient Agar and microscopic analyses (data not shown), morphotypes of 3805 yeast colonies were identified. A number of representative colonies were isolated and purified: 553 yeast isolates were stored at 4°C on Malt Agar (30 g l À1 Malt extract, 15 g l À1 Agar; Oxoid) and used for further investigations.
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