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6 protocols using cw0100

1

Western Blot Analysis of Exosome Markers

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Cells were washed twice with PBS and then lysed in the RIPA lysis buffer (Sigma-Aldrich Corp.) at 4°C. After centrifugation, soluble proteins were quantified by BCA assay (Beyotime). Equal amounts of protein were separated by 15 Tris-glycine SDS–polyacrylamide gel (Invitrogen) electrophoresis, transferred to a PVDF membrane (Merck Millipore, Billerica, MA, United States), blocked with 5% BSA in PBST (PBS with 0.1% Tween), and incubated overnight at 4°C with primary antibodies targeting GAPDH (CW0100, CWBIO, Beijing, China), CD9 (ab92726, Abcam, Cambridge, United Kingdom), TSG101 (ab125011, Abcam), CD81 (sc-9158, Santa Cruz Biotechnology, Texas, TX, United States), PINK1 (#6946), Parkin (#4211), and LC3-I/II (#12741) (all from Cell Signaling Technology, Danvers, MA, United States). After incubation with the respective secondary antibodies (Jackson ImmunoResearch Laboratories, West Grove, PA, United States), the bands were visualized using enhanced chemiluminescence (Pierce, Rockford, IL, United States) and quantified using ImageJ (Media Cybernetics, Silver Springs, MD, United States).
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2

Evaluating Antibiotic Effects on Macrophages

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BMDMs were treated with ABs at 5 μg/ml, 10 μg/ml, 20 μg/ml, and 30 μg/ml respectively. The culture medium was discarded, and the proteins from BMDMs were extracted by using RIPA buffer with protease inhibitor (Beyotime, China) 24 h later. After being quantified by BCA assay, the proteins were loaded on sodium dodecyl sulfate-polyacrylamide (SDS) gels and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, USA). Then, the membranes were blocked with 5% BSA for 2 h at room temperature and incubated with primary antibodies overnight at 4 °C. Finally, the membranes were incubated with peroxidase-conjugated secondary antibodies (CWBio, China) for 1 h at room temperature. The protein bands were detected by the imaging system (Tanon, China) and quantified by ImageJ software. Primary antibodies include GAPDH (1:1000) (CWBio, CW0100, monoclonal, China), ARG-1 (1:400) (Cell Signaling Technology, 93668, monoclonal, USA), and TGF-β (1:500) (Abcam, ab215715, monoclonal, UK).
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3

Protein Expression Analysis in BMMSCs

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Total proteins were harvested from BMMSCs, bone marrow, and other organs with RIPA lysis buffer (Beyotime, China) and quantified by BCA assay. Next, the proteins were separated on sodium dodecyl sulfonate-polyacrylamide gels (SDS-PAGE), transferred to PVDF membranes (Millipore, Billerica, MA, USA), blocked in TBST containing 5% BSA, and incubated in first antibodies with Beclin1 (Cell Signaling, 3738, 1:1000), ATG7 (Cell Signaling Technology, 8558, 1:1000), LC3 (Cell Signaling Technology, 1274, 1:1000), p62 (Proteintech, 18420-1-AP, 1:1000), HDAC9 (Abcam, ab59718, 1:1000), H3K9ac (Abcam, ab10812, 1:1000), H3K18ac (Cell Signaling Technology, 9675, 1:1000), H4K16ac (Abcam, 13534, 1:1000), H3 (Cell Signaling Technology, 9715, 1:1000), p53 (Cell Signaling Technology, 2524, 1:1000), phospho-p53 Antibody (R&D systems, AF1043, 1:2500), Runx2 (Cell Signaling Technology, 2435, 1:1000), ALP (R&D systems, AF2910, 1:500), PPAR-γ (Abcam, 2435, 1:300), and GAPDH (Cwbiotech, CW0100, 1:4000), respectively. Then, the membranes incubated in secondary antibodies which coupled to peroxidase (Cwbiotech, China). Finally, the signals were detected by an enhanced chemiluminescence kit (7seapharmtech, China).
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4

Protein Extraction and Western Blot Analysis

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Total proteins were extracted with RIPA lysis buffer (Servicebio Technology, Wuhan, China). Thereafter, proteins were separated via SDS–polyacrylamide gel electrophoresis and then were subsequently transferred to polyvinylidene fluoride membranes. Subsequently, the membranes were incubated with primary antibodies for the following proteins: Akt (1 : 1000; 9272S, CST), p-Akt (Ser473; 1 : 1000; 4060S, CST), Rps6kb1 (1 : 1000; 9202S, CST), p-Rps6kb1 (Thr-389; 1 : 1000; 9205S, CST), Eif4ebp1 (1 : 1000; 9452S, CST), p-Eif4ebp1 (Ser-65; 1 : 1000; 9451S, CST), Yap (1 : 1000; 14074S, CST), p-Yap (Ser-127; 1 : 1000; 13008S, CST), Gapdh (1 : 2000; CW0100, CWBiotech, Beijing, China), and β-Actin (1 : 2000; CW0096, CWBiotech, Beijing, China). The membranes were then incubated with the corresponding secondary antibody (goat anti-rabbit IgG: 1 : 4000; BF03008, Biodragon-immunotech, Beijing, China; goat anti-mouse IgG: 1 : 4000, BF03001, Biodragon-immunotech, Beijing, China) for 2 h. Finally, the immunoblots were visualized with an ECL kit (CWBiotech, Beijing, China). The optical density of phosphorylated proteins (p-AKT, p-Rps6kb1, p-Eif4ebp1, and p-Yap) was measured by ImageJ software (National Institutes of Health, Bethesda, MD, USA) and normalized by the amount of the loading control on the same membrane.
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5

Western Blot Analysis of Retinal AANAT

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To perform Western blot analysis of whole retinae, the retinal samples were first lysed in ice-cold RIPA lysis buffer containing protease inhibitors (Beyotime). The lysates were centrifuged at 15,000 g at 4°C for 5 min, and the supernatants were then collected. Protein concentrations were determined using a BCA protein assay (Beyotime). A total of 25 μg of protein from each sample was loaded and electrophoresed on an SDS-polyacrylamide gradient gel (SDS-PAGE), and the blots were then transferred to PVDF membranes. The membranes were blocked in 5% non-fat milk at 37°C for 30 min. The membranes were incubated with anti-AANAT (1:1,000, ab3505, Abcam), anti-p-AANAT (phospho T29,1:1,000, ab3439, Abcam) and anti-GAPDH (1:1,000, CW0100, CWBIO) antibodies at 4°C overnight. The membranes were then rinsed with TBST and incubated with a horseradish peroxidase (HRP)-conjugated secondary antibody (Beyotime, 1:1,000) at 37°C for 1 h. The blotted proteins were visualized using an ECL detection system (Thermo Scientific).
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6

Western Blot Analysis of Hippocampal and Prefrontal Cortex Proteins

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Brains were quickly removed immediately after the last working memory test (retrieval). HIP and PFC tissues were dissected in cold artificial cerebrospinal fluid. These tissues were homogenized in a protein extraction buffer containing protease and phosphatase inhibitors. Protein concentration was measured using a Protein Assay kit (Boster, China). Proteins were separated on 10 % SDS-PAGE gels and transferred to PVDF membranes (Merck Millipore). After being blocked in 5 % milk for 1 h at room temperature, membranes were incubated overnight at 4 °C with the following primary antibodies: anti-HCN1 (1:1,000, NBP1-20250, Novus), anti-p44/42 MAPK (Erk1/2) (1:1,000, 4695S, Cell Signaling), antiphospho-p44/42 MAPK (Thr202/Tyr204) (1:1,000, 9101S, Cell Signaling), or GAPDH (1:5,000, cw0100, Cwbiotech). After incubation with horseradish peroxidase conjugated secondary antibodies (1:5,000; Proteintech Group Inc., China), bands were developed with chemiluminescent substrate (WBKLS0500, Millipore). Immunoreactive signals were quantified by NIH ImageJ software.
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