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11 protocols using novex ecl kit

1

Western Blot Protein Quantification Protocol

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Cells were homogenized in lysis buffer (20 mM Tris–HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, protease inhibitor cocktail (Roche)), sonicated and incubated 15 min on ice. Protein lysates were quantified by BCA protein assay (Thermo Fisher Scientific) and 25 μg protein samples were resolved on 10% NuPAGE Bis-Tris pre-cast polyacrylamide gels (Thermo Fisher Scientific) by SDS-PAGE and transferred to nitrocellulose membranes. Immunoblots were performed with specific primary antibodies (listed in Supplementary Table S3), diluted in 5% milk in TBS with 0.1% Tween-20 (Sigma-Aldrich). The Novex ECL kit (Thermo Fisher Scientific) was used for detection of the HRP-conjugated secondary antibodies. Densitometric analyses were performed using ImageJ software (NIH).
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2

Western Blot Analysis of TDP-43

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Cells collected by centrifugation and washed with ice‐cold PBS were lysed in lysis buffer (20 mmol/L Tris–HCl pH 7.5, 150 mmol/L NaCl, 1 mmol/L EDTA, 1 mmol/L EGTA, 1% Triton X‐100, protease inhibitor cocktail [Roche]). Cell extracts were quantified using Pierce BCA protein assay (Thermo Fisher Scientific) and 20 μg protein separated by SDS‐PAGE on 10% NuPAGE Bis‐Tris pre‐cast polyacrylamide gels (Thermo Fisher Scientific) and then transferred to nitrocellulose membranes. Membranes were blocked with 5% (w/v) nonfat dry milk in Tris‐buffered saline with Tween 20 (Sigma‐Aldrich) (TBST; 20 mmol/L Tris‐HCl [pH 7.6], 0.1% Tween 20, 137 mmol/L NaCl) for 1 hour. After blocking, membranes were incubated with primary antibodies (TDP‐43‐2AP (1:1000) and GAPDH [1:2000, Santa Cruz]) in blocking solution overnight at 4°C. After three washes, membranes were incubated with secondary antibodies (anti‐mouse/rabbit HRP‐conjugated, 1:10 000, both from Santa Cruz) for 1 hour at room temperature. The Novex ECL kit (Thermo Fisher Scientific) was used for detection of the HRP‐conjugated secondary antibody. Densitometric analyses were performed using ImageJ software (NIH).
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3

Protein Quantification and Visualization

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Total proteins isolated from cells or tissues were separated by electrophoresis and transferred to blotting membranes as described elsewhere [5 (link),13 (link)]. The membranes were preblocked, incubated overnight with antibodies to MARCO, TIM4, CD68, or GAPDH (anti-MARCO—ab 256822, 1:200; anti-TIM4—ab47637, anti-CD68-ab ab125212, anti-GAPDH—sc-25778, Abcam, Cambridge, UK), washed, and incubated with HRP-conjugated antibodies (Bio-Rad, Hercules, CA, USA). The bands were developed with Novex ECL Kit (Thermo Fisher, Waltham, MA, USA) in a ChemiDoc™ system (Bio-Rad, Hercules, CA, USA). The densitometry was carried out using ImageLab Software (Bio-Rad, Hercules, CA, USA) against GAPDH as a reference protein. For an image of the uncropped membrane after blotting, see Supplementary Material (Figure S2).
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4

Quantitative Nuclear Protein Analysis

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Nuclear protein from cells or tissues was extracted using a BBproExtra® extraction kit (BB-3102, Best-Bio, Jiangsu, China). The protein concentration was examined by the BCA kit Solarbio Science & Technology, Beijing, China), followed by SDS-PAGE to transfer the protein onto a polyvinylidene fluoride membrane. The membranes were blocked by 8% non-fat milk and probed with antibodies against β-catenin (1:1,000, #8480, CST) or TCF3 (1:500, GTX637791, Genetex) overnight at 4 °C, followed by incubation with goat anti-rabbit IgG (1:100, GTX213110-01, GeneTex) at 23–25 °C for 2 h. The protein blots were visualized using the Novex™ ECL kit (Thermo Fisher Scientific), followed by quantification analysis using Quantity One. Lamin B1 (1:500, ab229025, Abcam) or β-actin (1:500, GTX109639, Genetex) was used as the internal reference. Uncropped WB bands were displayed in Supplementary Files.
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5

Immunoblotting of Antioxidant Proteins

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Sample preparation and immunoblotting were performed as previously described [23] (link). Membranes were incubated with primary antibodies (anti-SOD1–ab13498; anti-SOD2–ab16956; anti-catalase- ab76024; anti-GPx1–ab108427; anti-VDAC1–ab154856; anti-TFAM–ab155240; anti-PGC-1α–ab77210; anti-PGC-1β–ab176328; anti-OPA1–ab119685; anti-MFN1–ab57602; anti-MFN2–ab56889; anti-DRP1–ab56788; anti-LC3A–ab52628; anti-HK1–ab55144, all–Abcam, USA; anti-beta-actin–MA5-15739, anti-Bcl-2-13-8800, Invitrogen, USA) overnight at 4 °C with gentle shaking. After washing, the membranes were incubated with peroxidase-conjugated secondary antibodies for 1 h at room temperature. Target proteins were detected using Novex ECL Kit (Invitrogen, USA) in ChemiDoc station (Biorad, USA). Optical densities of the protein bands were measured using ImageLab Software. Protein content was normalised on β-actin.
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6

Western Blot Analysis of Immune Markers

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For Western-Blot sampling, sorted cells from 5 animals were pooled. The cell pellet was lysed with 50 μL of ice-cold RIPA buffer. Thereafter, Laemmli Sample Buffer (Bio-Rad Laboratories, Inc., Hercules, CA, USA) was added with heating at 95 °C. The proteins were separated by 10%–12.5% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a membrane as described previously [57 (link)]. After blocking membranes were stained overnight with antibodies to Arg1, iNOs, CCR7, IL6, IL10, FXYD2, ALOX12, or GAPDH (anti-Arginase I: sc-18351, 1:200; anti-NOS2:sc-651, anti-GAPDH:sc-25778, Santa Cruz, USA, anti-CCR7:ab32527, anti-IL6:ab7737, anti-IL10:ab9969, Abcam, UK), anti-FXYD2:PA5-75640, anti-ALOX12:PA5-78760, ThermoScientific, Waltham, MA, USA), washed thrice, and stained with HRP-conjugated antibodies (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Bands were imaged with a Novex ECL Kit (Invitrogen, Carlsbad, CA, USA) in a ChemiDoc™ system (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Densitometry analysis was carried out using ImageLab Software (Bio-Rad Laboratories, Inc., Hercules, CA, USA). GAPDH was used as a reference protein. Uncropped membranes after blotting are available in Supplementary Materials.
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7

Western Blot Analysis of Hypoxia Markers

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Liver fragments were lysed in Protein Solubilization Buffer (PSB, Bio-Rad, USA) with Complete Protease Inhibitor Cocktail (Roche, USA), homogenized with pestle and centrifuged 30 min at 14,000 g. Thereafter, 2x loading buffer was added to the supernatant, and the sample was incubated at 65 °C for 5 min. For the protein separation, 10%–12.5% SDS-PAGE was performed. Transfer from the gel to PVDF membranes by semi-wet approach was conducted using Trans-Blot® Turbo™ RTA Mini LF PVDF Transfer Kit (Bio-Rad, USA). The membranes were blocked with milk (5%) in Tris-buffered saline with Tween 0.1% (TTBS) for 1 h at room temperature, then incubated overnight with primary antibodies to HIF1α (ab179483, 1:1000, abcam) and GAPDH (sc-25778, 1:1000, Santa Cruz), PHD2 (ab244389, 1:500, abcam) overnight at 4 °C with gentle shaking. Thereafter samples were stained with horseradish peroxidase (HRP) conjugated secondary antibodies (Bio-Rad, USA) for 1 h at room temperature. Target proteins were visualized by Novex ECL Kit (Invitrogen™ Thermo Fisher Scientific, USA) in ChemiDoc (Bio-Rad, USA). For optical density measurements of the protein bands Image Lab Software tool was used with GAPDH as a reference protein.
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8

Western Blot Analysis of Protein Expression in A549 and A549/DDP Cells and Their Exosomes

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The total protein of A549 cells, A549/DDP cells, A549-exo, and A549/DDP-exo were extracted using RIPA lysate (89901; Thermo Scientific, USA) and Total exosomal RNA& Protein isolation kit (4478545; Invitrogen), and the total protein concentration of each sample was detected. An equal amount of total protein was taken to perform electrophoretic separation using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Subsequently, proteins in SDS-PAGE were transferred to polyvinylidene fluoride (PVDF) membranes using the wet transfer method. PVDF membranes were closed with 5% bovine serum protein (ST023-50 g; Beyotime, China) for 1 h. PVDF membrane was then added with primary and secondary antibodies of target proteins. The antibody information is shown in Supplementary Table 1. PVDF membranes were color developed using Novex™ ECL Kit (WP20005; Invitrogen), and images were collected using an Axygen® Gel Imaging System (GD-1000; Corning, USA).
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9

Protein Isolation and Western Blot Analysis

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The tissue was homogenized in protein solubilization buffer (MicroRotofor Lysis Kit, Bio-Rad) with tributylphosphine and cOmplete protease inhibitor cocktail (Roche) and centrifuged at 14,000 g for 30 min. The supernatant was mixed with sample loading buffer, heated at 65°C for 5 min and stored at −20°C. Protein separation was carried out in 10.0%–12.5% PAAG. The transfer to PVDF membranes (Bio-Rad) was performed in a Trans-Blot Turbo Transfer System (Bio-Rad) at standard settings. The membrane was incubated in EveryBlot Blocking Buffer (Bio-Rad) for 15 min at room temperature and stained with protein-specific antibodies overnight at 4°C, washed, and incubated with secondary HRP-conjugated antibodies for 1 h at room temperature. Chemiluminescence was visualized using Novex ECL kit (Invitrogen, United States) in a ChemiDoc Imaging System (Bio-Rad). Chemiluminescence intensity was analyzed using ImageLab software with GAPDH as normalization reference. The uncropped WB membranes are shown in the Supplementary Figure S2.
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10

Protein Analysis by Western Blotting

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The cells were lysed in 2× lysis buffer containing 200 mM Tris-HCl, protease inhibitor cocktail (Roche, Pleasanton, CA, USA), 400 mM β-mercaptoethanol (Bio-Rad Laboratories, Inc., Hercules, CA, USA), 4% sodium dodecyl sulfate (SDS; Serva), 0.01% bromophenol blue, and 40% glycerol (PanReac, Barcelona, Spain) and incubated at 95 °C for 1 min. Proteins were separated using 10% or 12.5% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred from the gel to PVDF membranes by a semi-wet approach using Trans-Blot® Turbo™ RTA Mini LF PVDF TransferKit (Bio-Rad Laboratories, Inc.). Membranes were blocked with 5% milk on tris-buffered saline containing 0.1% Tween (TTBS) for 1 h at room temperature, then stained overnight with primary antibodies against GAPDH, GRP78, LC3B, involucrin, filaggrin, and subsequently with HRP-conjugated secondary antibodies (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Target proteins were visualized by Novex ECL Kit (Invitrogen, Waltham, MA, USA) in the ChemiDoc™ visualization system (Bio-Rad Laboratories, Inc.). Optical density of the protein bands was determined using ImageLab Software (Bio-Rad Laboratories, Inc.).
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