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Oat spelts xylan

Manufactured by Merck Group
Sourced in United States

Oat spelts xylan is a product offered by the Merck Group for laboratory use. It is a complex polysaccharide derived from the cell walls of oat plants. Xylan is a major hemicellulose component found in plant cell walls and serves as a structural element. The product specifications and availability may vary. For more detailed information, please consult the Merck Group's product catalog or contact a sales representative.

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6 protocols using oat spelts xylan

1

Enzymatic Activities and Respiration in Solid-State Fermentation

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The endoglucanase activity and filter paper activity (FPA) were measured using CMC-Na (Sigma, USA) and filter paper (Whatman No.1) as substrates, following the method described by Xue et al. [56 (link)]. Xylanase activity was assayed with oat spelts xylan (Sigma, USA) as the substrates [57 (link)]. The assays for these three enzymes were conducted at 50 °C for 10 min in a 0.1 M acetate buffer (pH 4.8). Subsequently, the released reducing sugars were measured using the DNS method [58 ]. The cellobiohydrolase activity was determined in 0.1 M acetate buffer at 50 °C for 30 min with pNPC (Sigma, USA) as substrates according to Liu et al. [59 (link)]. One enzyme activity unit was defined as the number of enzymes required to liberate one μmol glucose or pNP per minute under the assayed conditions. The respiratory rate of T. guizhouense under SSF was evaluated by tracking the release of CO2. Briefly, the triangular flasks for SSF were sealed with a parafilm for 2 h before sampling, and then 20 mL of gas was extracted with a syringe. The collected gas was injected into the gas sampling bag (E-SWITCH, China), and the contents of CO2 were determined by gas chromatography (Agilent 7890A) equipped with a Porapak Q column and a flame ionization detector (FID) according to Zhang et al. [60 (link)].
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2

Enzyme Activity Assays for Lignocellulose Degradation

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Equally harvested biomass samples of different treatments were transferred to the medium with rice straw as the sole carbon source and incubated at 37 °C to determine the growth rate. For enzyme activity assays, 1 mL of fresh spore suspension (1.0 × 107 spores·mL−1) of different strains was inoculated for SSF. All samples of different treatments were collected on the 4th day, and three biological replicates were collected at each sampling point. Filter paper activity (FPA) and endoglucanase activity (EG) were measured according to the method described by Xue et al. [27 (link)] with filter paper (Whatman NO.1) and CMC-Na (Sigma, St. Louis, MO, USA) as the substrates. Xylanase activity (XYL) was assayed with oat spelts xylan (Sigma, St. Louis, MO, USA) as the substrate [28 (link)]. The reaction system was executed in 0.1 M acetate buffer (pH 4.8) at 50 °C for 10 min, after which the DNS method was used to measure the released reducing sugars. The cellobiohydrolase activity (CBH) was determined in 0.1 M acetate buffer at 50 °C for 30 min with pNPC (Sigma, St. Louis, MO, USA) as the substrate according to Liu et al. [29 (link)]. One enzyme activity unit was defined as the amount of enzyme required to liberate 1 μmol glucose or pNP per minute under the assayed conditions.
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3

Measurement of Cellulolytic and Xylanolytic Enzyme Activities

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Endoglucanase, exoglucanase and xylanase activities were measured using carboxymethyl cellulose sodium (CMC-Na) (Sinopharm Chemical Reagent Co., China), p-nitrophenyl-β-d-cellobiose (pNPC) (Sigma, USA), and oat spelts xylan (Sigma, USA) as the substrate, respectively, according to the methods described previously [20 (link), 41 (link)]. One unit of enzyme activity was defined as the amount of enzyme required to release 1 μmol reducing sugars or pNP from the substrate in 1 min. Protein concentrations were determined using the Bradford protein assay kit (ThermoFisher, USA) based on the product description [42 ]. All the enzyme activities were reported as the means of at least three replicates.
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4

Lignocellulose Degradation by Aspergillus fumigatus

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Aspergillus fumigatus Z5 (CGMCC Accession No. 3309, China General Microbiology Culture Collection Center, Genome GenBank accession AZZA01000000) is stored in our lab and used for the study of lignocellulose degradation. The cultivation was performed according to Miao et al. (2015a (link)). Briefly, 1 × 107 fresh conidia was added into 200 ml of Mandels’ salt solution supplemented with 2% (w/v) oat spelts xylan (Sigma, USA), and then incubated for 20 h at 50 °C and 150 rpm. The mycelia were then harvested and washed thoroughly with sterile water to be stored at − 80 °C for RNA extraction.
Pichia pastoris X33 (Invitrogen, USA) was used as the gene expression host. Plasmid construction and storage was based on the Escherichia coli Top10 (stored in our lab) cultivated in LLB (Low-salt Luria–Bertani) medium (1% peptone, 0.5% yeast extract, 0.5% NaCl, pH7.0). YPDS medium (2% peptone, 1% yeast extract, 2% glucose, 1 M sorbitol, pH 6.0) was used for transformants screening. BMGY/BMMY (2% peptone, 1% yeast extract, 1.34% YNB, 4 × 10−5% biotin, 1% glycerol or 0.5% methanol, pH 6.0) was used as the growth/induction medium for enzyme production.
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5

Characterization of Glycosidic Polymers

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Curdlan from Alcaligenes faecalis, pachyman, ivory nut mannan, and a series of d-laminarioligosaccharides (L2–L6) were purchased from Megazyme International Ireland Ltd. (Wicklow, Ireland). All other chemical compounds, including para-nitrophenyl (pNP)-sugar derivatives, d-glucose, laminarin, lignin, Avicel PH-101, oat spelts xylan, beechwood xylan, barley β-1,3-1,4-d-glucan, and carboxymethylcellulose, were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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6

Characterization of Xylooligosaccharides and Polysaccharides

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A series of d-xylooligosaccharides of d-xylobiose (X2) to d-xylohexaose (X6), wheat arabinoxylan, ivory nut mannan, and curdlan from Alcaligenes faecalis were provided by Megazyme International Ireland Ltd. (Wicklow, Ireland). Chitosan was obtained from USB Co. (Cleveland, OH, USA). All other chemical compounds containing d-xylose, p-nitrophenyl (pNP)-sugar derivatives, Avicel PH-101, birchwood xylan, beechwood xylan, oat spelts xylan, lignin, locust bean gum, carboxymethylcellulose, and chitin from crab were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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