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13 protocols using sc 8007

1

Western Blot Immunodetection of Proteins

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The proteins were separated in a sodium dodecyl sulfate polyacrylamide gel electrophoresis gel and transferred onto a polyvinylidene fluoride membrane (Millipore, MA, USA) by wet transfer at 100 V. For immunodetection, the membrane was blocked for 1 h at room temperature with 5% bovine serum albumin, incubated with the primary antibody overnight at 277.15 K, and then incubated with the secondary antibody for 2 h at room temperature. The primary antibodies included anti-Tau (1:100; sc-32274, Santa Cruz Biotechnology Inc.), anti-HK1 (1:1,000; 19662-1-AP, Proteintech, Wuhan, China), anti-VDAC I (1:1,000; AF1027, Beyotime Biotechnology), anti-Bax (1:200; sc-7480, Santa Cruz Biotechnology Inc.), anti-PARP-1 (1:200; sc-8007, Santa Cruz Biotechnology Inc.), anti-caspase-3 (1:1,000; 9662S, Cell Signaling Technology, MA, USA), and anti-β-actin (E-AB-48018, Elabscience, Wuhan, China). The secondary antibodies included anti-mouse secondary antibody (HS201-01, TransGen Biotech, Beijing, China) at a 1:1,000 dilution or anti-rabbit secondary antibody (HS101-01, TransGen Biotech) at a 1:1,000 dilution. The signals were detected via chemiluminescence (Tanon, Shanghai, China).
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2

Western Blot Protein Analysis Protocol

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Protein lysates (20-25μg) were denatured using 1X Laemmli Buffer and run on 7.5, 10, or 16% SDS PAGE gels at 100V for about 2 hours. Proteins were then transferred onto a PDVF membrane (BioRad or Thermo Fisher Scientific) at 100V for 1 hour. Ponceau-S staining was done to verify transfer. Non-specific binding was blocked by incubating the membrane for at least one hour at room temperature or overnight at 4°C in 5% milk in TBS for non-phosphorylated proteins, or 5% Bovine serum albumin (BSA Fraction V, Fisher Scientific) in TBS for phosphorylated proteins. The membrane was then blotted with primary antibody diluted in 5% BSA or Milk in TBS supplemented with 0.1% Tween 20 (TBST). After an overnight incubation at 4°C, the membrane was washed with TBST and incubated in the secondary antibody for at least 2 hours at room temperature in 5% BSA or Milk in TBST. After washing out the secondary antibody in TBST, the membrane was exposed to BioRad's Clarity Western ECL substrate according to manufacturer's instructions. Signal was detected using UltraCruz Autoradiography Film (Santa Cruz Biotech). Antibodies for GAPDH and p-IκBα were obtained from Cell Signaling (Catalog # 14C10 and 14D4, respectively). BCL2α, Pro-caspase 3, PARP-1, and cytochrome c antibodies were obtained from Santa Cruz Biotech Catalog # SC-7382, SC-7148, SC-8007, and SC-271627, respectively.
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3

Western Blot Analysis of Protein Targets

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Cells were lysed in RIPA buffer (50 mM Tris-HCl, 150 mM NaCl, 1% Triton X-100, 0.1% SDS, 1 mM EDTA, and 1% sodium deoxycholate) in the presence of 1× protease and phosphatase inhibitor cocktails (Sigma-Aldrich, MO, USA). Proteins were resolved by SDS-PAGE and transferred to Hybond ECL membrane (GE Healthcare, CO, USA). The membrane was immunoblotted with antibodies against Poly(ADP-ribose) 10H (ALX-804-220-R100, 1:400, Enzo Life Sciences, NY, USA), PARP1 (sc-8007, 1:1000, Santa Cruz Biotechnology, TX, USA), MYCN (sc-53993,1:250, Santa Cruz Biotechnology) and TUBB (T8328, β-tubulin; 1:5000, Sigma-Aldrich), each diluted in 5% milk and incubated at 4°C overnight. After the application of the appropriate HRP-conjugated secondary antibody and further washes, the immunoreactive protein was visualised using ECL reagents (GE Healthcare, IL, USA) according to the manufacturer’s instructions.
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4

Quantifying Protein Expression by Western Blotting

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To evaluate the changes in protein expression, western blotting was performed as follows. Briefly, cells were lysed with lysis buffer and centrifuged at 4°C. The protein concentration was determined by a bicinchoninic acid (BCA) protein assay kit (Pierce, Rockford, IL, USA). Protein lysates (30 μg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrotransferred to polyvinylidene difluoride (PVDF) membranes (PALL, Ann Arbor, MI, USA). The membranes were blocked with 5% nonfat milk in TBS-T buffer (TBS buffer containing 0.1% Tween 20) for one hour and incubated with primary antibodies such as Bax (AP1302a, Abgent, San Diego, CA, USA), ERK1/2 (GTX50868, GeneTex, Irvine, CA, USA), SOD1 (Ab13498, Abcam, Cambridge, UK, Eng.), SOD2 (Ab68155, Abcam), GPX4 (Sc-8007, Santa Cruz, Dallas, TX, USA), and β-actin (Sc-47778, Santa Cruz) as well as HRP-conjugated secondary antibodies. HRP luminescence was detected with an enhanced chemiluminescence (ECL) detection kit (Amersham Piscataway, NJ, USA).
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5

Antibody Reagents for Cell Signaling

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Antibody against Plk1 (sc-17783) and PARP1 (sc-8007) were purchased from Santa Cruz Biotech. Antibodies against β-Actin (A-5441), cleaved-PARP (AB6535), and γH2AX (ab26350) were obtained from Sigma, EMD Millipore, and abcam, respectively. All other antibodies were purchased from Cell Signaling.
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6

Quantifying PARP-1 and Cleaved-PARP-1 Immunohistochemistry

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After removing the paraffin and following the experimental sequence of tissue preparation previously described for immunohistochemistry, the samples were incubated overnight at 4 °C with the primary anti-PARP-1 antibody (sc-8007, Santa Cruz Biotechnology, INC); the samples were later incubated with the secondary antibody bound to biotinylated anti-mouse IgG for PARP-1 (GTX77315, GeneTex) during 60 min at 37 °C. Immunohistochemical signals were detected as previously described. EcoMount from Biocare Medical was used as a mounting medium once the samples were completely dry. Images were acquired using an Olympus IX71 inverted microscope (with the 20× objective lens) and the software Qcapturepro 5 of the company QImaging. PARP-1 positive and claved-PARP-1 cells were quantified using the fiji.sc software.
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7

Immunohistochemical Analysis of PARP-1

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Tumor and muscle tissue was prepared
and stained using anti-PARP-1 antibody (mouse antihuman and mouse
antibody; sc-8007; Santa Cruz), as reported previously.19 (link) Haematoxylin and eosin and Ki67 staining were
performed using a Leica ST5020 multi-stainer. Histology images were
acquired using a Zeiss AX10 brightfield microscope at a 5× magnification.
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8

Protein Quantification and Western Blotting

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Total protein was extracted from cells and quantified. The same amount of total proteins was resolved in 4 to 20% Tris–Glycine gel, and the subsequent immunoblot was performed as previously described [3 (link)]. Antibodies used for Western blotting, included: NQO1 (1:1000; #3187), cleaved caspase 7 (1:1000; #8438), cleaved caspase 3 (1:1000; #9664), p-cdc2 (Tyr15)(1:1000; #9111), p-cdc25c (Ser216)(1:1000; #4901), p-Chk2 (Thr68)(1:1000; #2197), Chk2 (1:2000; #6334), cdc25c (1:1000; #4688), and XRCC1 (1:1000; #2735) from Cell Signaling Technology (Danvers, MA, USA), p53 (1:1000; SC-126, Santa Cruz, La Jolla, CA), γH2AX (Ser139, 1:2000; JBW301, Millipore, Temecula, CA), PARP1 (1:1000; SC-8007, Santa Cruz, La Jolla, CA), PAR (11,000; Trevigen, Gaithersburg, MD), while rabbit anti-β-actin (13,000; #4970, CST, Danvers, MA, USA) and mouse anti-α-Tubulin (15,000; #3873, CST, Danvers, MA, USA) antibodies served as loading controls.
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9

Western Blot Antibody Analysis

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Antibodies (Abs) against cyclin D1 (sc-718), β-actin (sc-4778), PARP (poly(ADP-ribose) polymerase, sc-8007) and exportin 1 (XPO1, sc-5595) were purchased from Santa Cruz Biotechnology. An Ab against α-tubulin (T6199) was purchased from Sigma-Aldrich, and an anti-glyceraldehyde-3-phosphate dehydrogenase Ab (GAPDH, clone 6C5) was obtained from Life Technologies. Abs against hexokinase 2 (#2106), and binding immunoglobulin protein (BiP, #3183) were obtained from Cell Signaling Technologies. ImmunoPure peroxidase-conjugated goat anti-rabbit and anti-mouse IgG (H + L) secondary Abs were purchased from Pierce Protein Research Products.
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10

Immunoblotting for DNA Damage Response

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Antibodies against BAP1 (sc-28383) and PARP1 (sc-8007) were obtained from Santa Cruz Biotechnology; Rabbit polyclonal anti-PAR polymer antibody (336-BPC-100) from Trivegin; RhoGDI (06–730) and β-Actin (A5441) from Sigma-Aldrich; anti-H2AX pS139 (REA502) from Miltenyi Biotech. Horseradish peroxidase (HRP)-conjugated antibodies to mouse (Santa Cruz, sc-516102) or rabbit (CST, 7074) were used as secondary antibodies.
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