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11 protocols using p smad1 5 8

1

Immunofluorescence analysis of cell signaling

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Cells grown on glass culture plates were rinsed with phosphate-buffered saline (PBS), fixed with 4% paraformaldehyde for 30 min at room temperature (RT), and permeabilized with 0.1% (v/v) Triton X-100 (Solarbio) for 30 min at RT. Then, the cells were incubated in 3% bovine serum albumin at RT for 2 h to block nonspecific binding. The substrates were incubated with Pitx1 (mouse, Santa Cruz Biotechnology), Dlx2 (mouse, Santa Cruz Biotechnology), AMBN (rabbit, Abcam), β-catenin (rabbit, Abcam), and p-Smad1/5/8 (goat, Santa Cruz Biotechnology) primary antibodies at RT for 2 h. Then, the cells were washed twice with PBS and incubated with secondary antibodies for 1 h in the dark. The nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI, 1 μg/mL; Sigma-Aldrich) for 5 min at RT. The cells were visualized with a laser scanning confocal microscopy (Nikon Corporation).
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2

Western Blot Analysis of Cellular Proteins

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After total protein of EMs or cells was determined by a BCA assay, protein samples were separated on a 10% SDS-PAGE gel, transferred onto an immobilon transfer membrane (Millipore, MA) and blocked at 4°C overnight in 5% Non-Fat Milk. Membranes were then incubated with primary antibodies against Noggin, CD63, Cytochrome c, GM-130, Calnexin, pSmad 1/5/8, BMPR1A or GAPDH (Santa Cruz Biotechnology, CA) for 2 hour. Membranes were then washed with PBST buffer and incubated with secondary antibodies for 1 hour at room temperature. The membranes were washed again with PBST buffer for 5 min and imaged with the Clarity Western ECL Substrate (Bio-Rad, CA) and a VersaDoc 4000 MP (Bio-Rad).
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3

Molecular Interactions in Osteoblast Differentiation

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After the osteoblast precursor cells were cultured for the indicated times, the cells were washed with chilled PBS and lysed in extraction buffer (50 mM Tris-HCl [pH 8.0], 150 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40, PMSF, and protease inhibitors). For immunoprecipitation, 293T cells were transfected with Flag-Lmx1b and HA-Runx2 for 48 h, or mature osteoblasts were harvested after washing with ice-cold PBS and lysed in extraction buffer. The lysates were immunoprecipitated using the indicated antibodies. The cell lysates and precipitated samples were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) transferred to poly vinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The primary antibodies used included Runx2, p-Smad158 and Smad158 (Santa Cruz Biotechnology, Dallas, TX, USA); HA; Flag and Actin (Sigma); p-Akt, Akt, p-Erk, and Erk (Cell Signaling Technology, Danvers, MA, USA); and Alp, Osx, and Lmx1b (Abcam, Cambridge, UK). HRP-conjugated secondary antibodies (Abcam) were probed and developed with ECL solution (Millipore). Signals were detected using enhanced chemiluminescence and analyzed using the Azure c300 chemiluminescent western blot imaging system (Azure Biosystems Inc., Dublin, CA, USA).
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4

Immunohistochemical Analysis of Signaling Pathways

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The decalcified paraffin sections for IHC eliminated the endogenous peroxidase activity with 3% H2O2 and retrieved antigens with boiled citrate buffer. Then, the sections were treated with 3% bovine serum albumin and 10% normal goat or rabbit serum to reduce non-specific immunoreactions. The sections were incubated with rabbit polyclonal primary antibodies against p-Smad1/5/8, p-Erk1/2, p-Junk, p-p38, DSP from Santa Cruz (Santa Cruz Biotechnology, Inc., Dallas, TX, United States), and rabbit polyclonal primary antibodies against Shh, Gli1, Nfic, OSX from Abcam (Abcam, Cambridge, MA, United States) overnight at 4°C and then the biotinylated-conjugated secondary antibodies (goat anti-rabbit antibodies) at room temperature for 1 h. The immunopositive loci were detected by the ABC kit and the DAB kit (Vector Laboratories, Burlingame, CA, United States) following the manufacturer’s instructions.
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5

Bone Protein Expression Analysis

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Tibial bone homogenates were lysed in lysis buffer containing protease inhibitor (Roche, Mannheim, Germany) and centrifuged at 10,000× g for 10 min at 4 °C. The total protein levels were determined using a Bio-Rad protein kit (Bio-Rad, Hercules, CA, USA). The proteins were subjected to 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto Immobilon-P transfer membranes (Millipore Co., Bedford, MA, USA), which were blocked with 5% bovine serum albumin prior to incubation with a specific primary antibody against BMP-2 (Abcam, Cambridge, UK), RUNX2 (Abcam), p-SMAD1/5/8 (Santa Cruz Biotechnology, Inc., Santa Cruz, TX, USA), Wnt3a (Abcam), osteocalcin (Abcam), COL-1 (Abcam), phosphorylated serine/threonine kinase (p-AKT) (Cell Signaling Technology, Danvers, MA, USA), p-ERK (Cell Signaling Technology), p38 (Cell Signaling Technology) and β-actin (Cell Signaling Technology) followed by goat anti-rabbit IgG (H + L) horseradish peroxidase (HRP)-conjugated secondary antibody (Zymax, San Francisco, CA, USA). The antigen-antibody complexes were visualized by enhanced chemiluminescence. Densitometric analysis of the signal was performed using a C-DiGit Blot Scanner (Li-COR Inc., Lincoln, NE, USA). Relative expression was quantified using Image J (NIH, Bethesda, Rockville, MD, USA) and compared to β-actin.
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6

Immunoblotting Protocol for Cellular Proteins

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Immunoblotting was performed as previously described30 (link). Equal amounts of cellular protein or tissue lysates were used. Blots were incubated with specific antibodies to elastase 1 (200ng/ml; Santa Cruz Biotechnology), elastase 2 (200 ng/ml; Abgent), kallikrein 1 and 6 (both 200 ng/ml; Sigma-Aldrich), kallikrein 5 (300 ng/ml; Acris Antibodies), c-kit (200 ng/ml; Cell Signaling Technology), Sca1 (200 ng/ml; Merck Millipore), CD10 (1:100; ThermoFisher), CD44 and CD90 (both 200 ng/ml; Abcam), CD71 (1:200; ThermoFisher), pSMAD1/5/8 (200ng/ml; Santa Cruz Biotechnology), Sox2, Klf4, Slug and pSMAD2/3 (all 400 ng/ml; Cell Signaling Technology) and total SMAD (400 ng/ml; Santa Cruz Biotechnology). β-Actin (1:5000 dilution; Sigma-Aldrich) was used as loading control.
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7

Quantification of Noggin and Smad Signaling

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Total cellular protein was extracted using radioimmunoprecipitation assay (RIPA) buffer with proteinase inhibitor (Boster, Wuhan, China). The protein concentration was measured by bicinchoninic acid (BCA) method. Protein was then separated on a 10% SDS-PAGE and transferred to nitrocellulose membranes (Bio-Rad). The membranes were blocked with 5% skimmed milk in Tris buffered saline-Tween (TBST) and incubated overnight with primary antibodies, followed by incubation with horseradish-peroxidase-conjugated antibodies. β-actin was used as loading control. The primary antibodies of Noggin, p-Smad1/5/8, Smad1 and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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8

Immunofluorescence Analysis of SMAD Signaling

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Tissue sections were fixed in 4% paraformaldehyde and processed as previously described [18] (link). Immunofluorescence was performed in detail as previously described [19] (link). We used specific antibodies for pSMAD1/5/8 (Santa Cruz Biotechnology), total SMAD and ALK2 (both from Santa Cruz Biotechnology), ABCC6 (MRP6 antibody S-20, Santa Cruz Biotechnology), albumin (Bethyl Laboratories). The nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma–Aldrich) [19] (link).
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9

Western Blot Analysis of Bone Markers

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Tibias were homogenized in RIPA lysis buffer including protease inhibitor (Roche, Mannheim, Germany) and centrifuged at 10,000× g for 10 min at 4 °C. The total protein levels were determined using a Bio-Rad Protein Assay Kit. The proteins were subjected to SDS-PAGE and transferred onto Immobilon-P transfer membranes, which were blocked with bovine serum albumin (5%) prior to incubation with specific primary antibodies raised against BMP-2, Wnt3a, RUNX2, or COL-1 (Abcam); p-SMAD 1/5/8 (Santa Cruz, Texas, USA); or p-ERK, p-p38, p-JNK, or β-actin (Cell Signaling Technology, Danvers, MA, USA). The membranes were then incubated with the appropriate secondary antibodies, either goat anti-rabbit IgG H&L (HRP) (Abcam) or goat anti-mouse IgG H&L (HRP) (Abcam). The antigen-antibody complexes were visualized using enhanced chemiluminescence. Densitometric analysis was performed using a C-DiGit Blot Scanner (Li-COR Biosciences, Lincoln, NE, USA).
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10

Western Blot for Bone Marker Proteins

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For the western blot analysis, each protein extract (30 μg of total protein) was resolved by SDS-PAGE using 10% polyacrylamide gels and subsequently transferred to Immun-Blot® PVDF membranes (Bio-Rad, Hercules, CA, USA). The primary antibodies and their dilution factors were as follows BST2, 1:1000 (Santa Cruz Biotechnology, Dallas, TX, USA); RUNX2, 1:1000 (Santa Cruz Biotechnology); SMAD1, 1:1000 (Abcam, Cambridge, UK); SMAD4, 1:500 (Abcam); SMAD5. 1:500 (Abcam); SMAD 8, 1:500 (Abcam); T-SMAD1/5/8, 1:500 (Santa Cruz Biotechnology); p-SMAD1/5/8, 1:500 (Santa Cruz Biotechnology), and β-actin, 1:1000 (Sigma-Aldrich). Secondary antibodies were used at a 1:5000 dilution. The detection of protein bands was facilitated by an Enhanced Chemiluminescence Kit (Elpis Biotech) and membranes exposures to X-ray film (Amersham, Buckinghamshire, UK).
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