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Magnetom trio mr scanner

Manufactured by Siemens
Sourced in Germany

The Magnetom Trio MR scanner is a magnetic resonance imaging (MRI) system designed and manufactured by Siemens. The core function of the Magnetom Trio is to generate high-resolution images of the human body using powerful magnetic fields and radio waves.

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13 protocols using magnetom trio mr scanner

1

Multimodal MRI Acquisition and Preprocessing

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The recordings were performed in a 3-T Siemens Magnetom Trio MR Scanner (Siemens, Erlangen, Germany) with a 12-channel head coil. The functional T2*-weighted MR images were acquired with an echo planar imaging (EPI) sequence. The characteristics of the sequence were 250 and 406 volumes for the resting state and the Sternberg WM task, respectively, 35 slices, 3 mm × 3 mm × 3 mm, matrix size 64 × 64, FOV 192 mm × 192 mm, TR/TE = 1960 ms/30 ms.
The structural T1-weighted sequence (ADNI) had following parameters: 176 sagittal slices, slice thickness 1.0 mm, voxel size 1 mm × 1 mm × 1 mm, FOV 256 mm × 256 mm, TR/TE = 2300 ms/2.98 ms.
Preprocessing of the functional MRI data was done in SPM8 (Welcome Department of Imaging Neuroscience, London).1 First, slice time correction was performed, and the data were motion corrected to the mean image. Then, the anatomical T1 was coregistered to the mean image, followed by its segmentation into six tissue probability maps. Finally, the data were normalized and smoothed using an FWHM kernel of 6 mm × 6 mm × 6 mm.
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2

Functional Brain Imaging with 3T MRI

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The images were collected at 3T on a Magnetom TRIO MR scanner (Siemens Medical Systems, Erlangen, Germany) with an eight-channel PA head coil for radio-frequency transmission and signal reception. Whole brain functional images were acquired using a T2*-weighted sequence sensitive to BOLD contrast; 664 for the main experiment and 107 for the localizer task (EPI: TR = 2630 ms, TE = 35 ms, 40 axial slices, image matrix  = 64×64, FOV = 224 mm, flip angle  = 80°, voxel size  = 3.5×3.5×3.5 mm). A 3-D high-resolution T1-anatomical image of the whole brain was also obtained for coregistration with the functional images (3-D MPRAGE: TR  = 1550 ms, TE  = 2.39 ms, TI  = 900 ms, 176 sagittal slices, acquisition matrix  = 256×256, FOV  = 220 mm, flip angle  = 9°, voxel size  = 0.9×0.9×0.9 mm).
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3

Idiopathic Cervical Dystonia MRI Analysis

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Twenty patients with idiopathic cervical dystonia were initially recruited for this study. Datasets from three patients were discarded due to movement artifacts, so the analysis comprised 17 patients (nine females). All patients received botulinum toxin A as part of their regular treatment. The degree of disability was rated using the Tsui Scale (31 (link)). Furthermore, 29 age- and gender-matched healthy subjects participated in the study (15 females). The approval by the institutional ethics committee (Ethik-Kommission des Fachbereichs Medizin der Goethe-Universität Frankfurt am Main, Germany) was obtained and all participants gave their written informed consent before taking part in the study.
The MRI acquisition was performed on a 3-Tesla whole body scanner (Magnetom TRIO MR scanner, Siemens Medical Solutions, Erlangen, Germany), equipped with an 8-channel phased-array head coil for signal reception and a body coil for radio frequency (RF) transmission.
The following measures were taken to reduce movement artifacts: Scans were conducted ~2 weeks after the last treatment with botulinum toxin when satisfactory treatment effects were already present in most patients. None of the examined patients suffered from severe head tremor. Furthermore, the head was comfortably bolstered in the coil to reduce movements.
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4

Functional MRI of the Cerebral Cortex

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Functional imaging was conducted on a 3T Magnetom Trio MR scanner (Siemens Medical Systems, Erlangen, Germany) in the department of Psychiatry, Psychotherapy and Psychosomatics at the Medical School of RWTH Aachen University. Functional images were collected with echo planar imaging (EPI) sensitive to blood oxygenation level dependent (BOLD) contrast (interleaved acquisition of 34 slices; repetition time [TR] = 2000 ms; echo time [TE] = 28 ms; flip angle [FA] = 77°; slice thickness = 3 mm; gap 0.75 mm; matrix size = 64 × 64; field of view [FOV] = 192 × 192 mm2; voxel size = 3 × 3 × 3 mm3). Slices covered the entire cerebral cortex and were positioned oblique-transversally to achieve maximal brain coverage. 420 volumes were collected per session, of which the first seven were discarded to remove the influence of T1 saturation effects. Head movement was minimized with the use of foam wedges to securely hold the head in the 12-channel head coil. Structural images were obtained using a high-resolution T1-weighted 3D-sequence (TR = 1900 ms; inversion time TI = 900 ms; TE = 2.52 ms; FA = 9°; FOV = 256 × 256 mm2; 176 3D-partitions with an isotropic resolution of 1 mm2).
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5

Functional MRI of Brain Activity

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All scans were performed on a 3 T Magnetom Trio MR scanner (Siemens Medical Systems, Erlangen, Germany) using standard gradients and a 32 channel head coil.
For each experimental block of each subject, one series of 390 functional volumes of T2*-weighted axial EPI-scans including five initial dummy scans, which were discarded immediately, was acquired parallel to the AC/PC line with the following parameters: number of slices (NS): 35; slice thickness (ST): 3.0 mm; interslice gap (IG): 0.3 mm; matrix size (MS): 96×96; field of view (FOV): 212×212 mm; echo time (TE): 30 ms; repetition time (TR): 2160 ms; flip angle (FA): 90°. For each participant an anatomical scan was acquired using a high-resolution T1-weighted 3D-sequence (NS: 192; ST: 1 mm; MS: 512×512; FOV: 256×256 mm; TE: 2.52 ms; TR: 2250 ms; FA 9°).
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6

Harmonized Cranial MRI Protocol

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Cranial magnetic resonance imaging (MRI) data were collected in two 60min scanning session with harmonized T1-weighted anatomical imaging sequences at high field strength in both study centers before surgery and during a follow-up assessment after three months. The complete neuroimaging protocol is described elsewhere (Winterer et al. 2018 ). In Berlin, an MPRAGE sequence (magnetization prepared rapid gradient echo in 192 sagittal slices, FOV: 256∙256mm2, voxel size: 1∙1mm2 at 1mm slice thickness, TR: 2500ms, TE: 4.77ms, 7° flip angle, parallel imaging with generalized autocalibrating partially parallel acquisitions GRAPPA using 24 reference lines, acceleration factor R = 2) was run on a 3T Magnetom Trio MR scanner (Siemens) equipped with a 32-channel head coil at the Berlin Center for Advanced Neuroimaging (BCAN). In Utrecht, an Achieva 3T MRI scanner (Phillips, Amsterdam) equipped with an 8-channel head coil was used at the beginning of the study, and later switched to an identical machine with a 32-channel head coil for technical reasons. A similar sequence was recorded (192 sagittal slices, FOV: 256∙232mm2, voxel size: 1∙1mm2 at 1mm slice thickness, TR: 2500ms, TE: 4.77ms, 7° flip angle, parallel imaging with sensitivity encoding SENSE, acceleration factor R = 2).
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7

Structural Brain MRI Acquisition Across Sites

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MR imaging was conducted on the same day the neurocognitive assessments took place. In Berlin, data were collected at the Berlin Center for Advanced Neuroimaging using a 3 T Magnetom Trio MR scanner (Siemens) with a 32-channel head coil. T1-weighted 3D structural brain scans were acquired using a MPRAGE sequence (magnetisation prepared rapid gradient echo in 192 sagittal slices, FOV: 256·256 mm2, voxel size: 1·1 mm2 at 1 mm slice thickness, TR: 2500 ms, TE: 4.77 ms, 7° flip angle). In Utrecht, data were collected with an Achieva 3 T MRI scanner (Phillips) equipped with an 8-channel head coil. For technical reasons, the scanner at this study site had to be exchanged with an identical machine equipped with a 32-channel head coil during the study. A similar T1w sequence was recorded here (192 sagittal slices, FOV: 256·232 mm2, voxel size 1·1 mm3; at 1 mm slice thickness, TR: 7.9 ms, TE: 4.5 ms, 8° flip angle).
A board-certified neuroradiologist screened all MR images for incidental findings with clinical relevance.
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8

Multimodal Neuroimaging with MRI and PET

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All studies involving human subjects were reviewed and approved by the Institutional Review Board (IRB) at Massachusetts General Hospital. All subjects provided written, informed consent in accordance with the Human Research Committee at Massachusetts General Hospital. The imaging studies were performed on a 3-T Tim MAGNETOM Trio MR scanner (Siemens Healthcare, Inc) with an MR-compatible BrainPET insert (Siemens). Three-dimensional (3D) coincidence event data were collected and stored in a list-mode format. Magnetic resonance imaging was performed using two concentric head coils: an outer circularly polarized transmit coil and an inner 8-channel receive-only coil specially designed for the BrainPET with considerations for 511 keV photon attenuation properties.
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9

Functional MRI Preprocessing Pipeline for Brain Imaging

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Data were acquired on a 3T Siemens Magnetom Trio MR Scanner (Siemens AG, Erlangen, Germany). GE EPI fMRI BOLD was recorded with 26 transversal slices; 3.0 × 3.0 in-plane and 4 mm slice thickness; TR/TE = 1600/35 ms, FA 90°; FoV = 240 × 240 mm; matrix = 92 × 92, 400 volumes acquired in 10 min 40 s. A structural T1-weighted MPRAGE was recorded with 176 sagittal slices, 0.9 × 0.9 in-plane and 1 mm slice thickness, TR/TE = 1900/2.57 ms; FoV = 230 × 230 mm; matrix = 256 × 256.
Preprocessing of fMRI data involved motion-realignment, linear drift correction (detrending), regression of motion (six motion parameters and first derivatives; Power et al., 2014 (link)) and physiological noise (WM and CSF signal fluctuations extracted from T1 image based tissue probability masks from SPM Dartel segmentation; Chang and Glover, 2009 (link); Birn et al., 2014 (link)) followed by co-registration of functional to individual structural images and normalization to MNI standard space and final smoothing with a Gaussian Kernel (FWHM 6 mm).
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10

Multimodal MRI Assessment of Children

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On the same day as the verbal fluency assessment, children underwent structural MRI on a 3 T Siemens Magnetom Trio MR scanner (Siemens, Erlangen, Germany) using an eight-channel head coil (Invivo, FL, USA). Two T1-weighted images were acquired using a 3D MPRAGE sequence (TR =1550 ms, TE =3.04 ms, matrix = 256 × 256, 192 sagittal slices, 1 × 1 × 1 mm3 voxels, acquisition time = 6:38). A T2-weighted image was acquired using a 3D turbo spin echo sequence (TR =3000 ms, TE =354 ms, FOV = 282 × 216, matrix = 256 × 196, 192 sagittal slices, 1 × 1 × 1 mm3 voxels, acquisition time = 8:29). Whole brain diffusion-weighted images were acquired using a twice-refocused balanced spin echo sequence that minimized eddy current distortion (Reese et al., 2003) including ten non-diffusion-weighted images (b = 0) and 61 diffusion-weighted images (b = 1200s/mm2) encoded along independent collinear diffusion gradient orientations (TR =8200 ms, TE =100 ms, FOV = 220 × 220, matrix = 96 × 96, GRAPPA: factor = 2, 48 lines, 61 transverse slices with no gap, 2.3 × 2.3 × 2.3 mm3 voxels, acquisition time = 9:50). To correct for B0 field distortions, a gradient echo field map was acquired (TR =530 ms, TE[1] =5.19 ms and TE[2] =7.65 ms, FOV = 256 × 256, matrix = 128 × 128, 47 transverse slices with no gap, voxel size = 2 × 2 × 3 mm3, acquisition time = 2:18).
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