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53 protocols using bicinchoninic acid protein assay kit

1

Proteomic Analysis of Inflammatory and Oxidative Markers

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Frozen colonic and hepatic tissues as well as serum were homogenized with radioimmunoprecipitation assay lysis buffer (Solarbio, Beijing, China) to extract total proteins. Total protein level was quantified with a bicinchoninic acid protein assay kit (Solarbio, Beijing, China). The concentrations of IL-6, IL-1β, and IL-10 were measured by ELISA kits (R&D Systems, Minneapolis, MN, USA). The levels of total superoxide dismutases (T-SOD), catalase (CAT), glutathione peroxidase (GSH-px), and malondialdehyde (MDA) were quantified using commercial kits (Nanjing Jiancheng Bioengineering Institute, Nanjing, China) according to the manufacturer’s directions.
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2

Western Blot Analysis of Cell Signaling

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After indicated treatment, cells were harvested and washed twice with PBS. Then they were lysed in RIPA buffer (Solarbio, Beijing, China) containing complete protease and phosphatase inhibitor (Solarbio, Beijing, China). The level of protein concentrations in cells was measured with a bicinchoninic acid protein assay kit (Solarbio, Beijing, China). The proteins were isolated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes by a wet electrophoretic transfer method. The membrane was blocked with TBST containing 5% non-fat milk for 2 h at room temperature followed by incubation overnight at 4 °C with primary antibodies. After overnight incubation, the blots were washed three times with TBST and incubated with secondary antibodies for 1 h at room temperature. Finally, the membranes were scanned using a Bio-Rad Gel imaging system (Bio-Rad, Berkeley, CA, USA) after visualization treatment with the ECL reagent. The primary antibodies, rabbit anti-PBK, rabbit anti-KIAA0101, rabbit anti-TOP2A, rabbit anti-IL-1β, and rabbit anti-β-actin, were purchased from Cell Signaling Technology (Boston, MA, USA). The rabbit anti-ASPM and rabbit anti-MCM10 were obtained from Proteintech (Rosemont, Chicago, IL, USA). Quantitative assessment of the and intensity was performed using Image Lab statistical software.
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3

Western Blot Analysis of Protein Expression

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The cells and tissue specimens were lysed with radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing phenylmethanesulfonyl fluoride (Beyotime) and a protease inhibitor (CoWin Biosciences). The protein concentration was determined using a bicinchoninic acid protein assay kit (Beijing Solarbio Science and Technology Co., Ltd. Beijing, China). Each sample with equal amounts of protein were separated using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis. After running 1–2 h under 120V, the protein was transferred onto a polyvinylidene difluoride membrane. Next, the membranes were blocked with 5% not-fat milk for 1 h at room temperature and incubated with primary antibodies c-Myc, HIF-1α, CXCR4, SDF-1, vimentin, E-cadherin, and β-actin overnight at 4°C (Affinity Biosciences). Subsequently, the membranes were washed 3 times with tris-buffered saline and Tween-20 and incubated with a horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse secondary antibody (Cell Signaling Technology, Beverly, MA, USA). Finally, the membranes were treated with a chemiluminescence reagent and exposed to X-ray. The band intensities were quantified using image J software (National Institutes of Health, Bethesda, MD, USA). Relative protein expression was quantified using control protein β-actin.
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4

Western Blot Analysis of Osteogenic Markers

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The cells were lysed using RIPA buffer (R0020; Solarbio) with phosphatase inhibitors (CW2383; Cwbio) and protease inhibitor (CW2200; Cwbio). Proteins extracted from each sample were determined using bicinchoninic acid protein assay kit (PC0020; Solarbio). Heat-denatured proteins were separated by 10% SDS-PAGE and transferred onto a 0.22 μm polyvinylidene difluoride membrane (IPVH00010; Millipore). The membranes were blocked in 5% skim milk at room temperature for 1 h; then, each membrane was incubated with antibodies against Traf6, Nfatc1, Ctsk, Runx2, ALP, Col1α1, and HRP-β-actin at 4°C overnight. After the membranes were incubated with the respective secondary antibodies for 1 h at room temperature, the blots were detected using a chemiluminescent HRP substrate (wbkls0500; Millipore). We used the ImageJ software to quantify the grayscale value of bands.
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5

Western Blot Analysis of Endometrial Proteins

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Proteins in endometrial tissues and ESCs were isolated using a radioimmunoprecipitation assay buffer (Solarbio, China). The protein concentration of the lysate was determined using a Bicinchoninic acid Protein Assay Kit (Solarbio, China), and 40 μg of protein from each sample were subjected to 10–12% SDS gels and transferred to PVDF membranes (Millipore, USA). After incubation with 5% nonfat milk for 1 h, the membranes were probed with the following primary antibodies at 4°C overnight: FGFR2 (1:2000; LifeSpan BioSciences, USA), E-cadherin (1:2000; Invitrogen, USA), N-cadherin (1:1000; Invitrogen, USA), vimentin (1:1000; Invitrogen, USA), ERK1 (phospho T202 + Y204) + ERK2 (phospho T185 + Y187) (1:1000; Abcam, USA), ERK1/2 (1:10,000; Abcam, USA), p38 (phospho T180) (1:1000; Abcam, USA), p38 (1:1000; Abcam, USA), JNK (phospho T183 + T183 + T221) (1:1000; Abcam, USA), JNK (1:1000; Abcam, USA), and β-actin (1:2000; Abcam, USA). After incubation with rat anti-mouse (1:1000; eBioscience™, USA) and goat anti-rabbit secondary antibodies (1:2000; Abcam, USA), immunoblots were developed using the ECL method.
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6

Western Blot Protein Analysis Protocol

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Cellular proteins were extracted using radio immunoprecipitation assay buffer, and the protein concentration was measured using a bicinchoninic acid protein assay kit (Solarbio). Proteins were separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels (12%). After being transferred onto nitrocellulose membranes, the membranes were blocked using 5% evaporated milk for 2 h at room temperature (RT). The membranes were then incubated with primary antibodies at 4°C overnight. The membranes were then washed with Tris-buffered saline with Tween-20 and subsequently incubated with the corresponding secondary antibodies for 1.5 h at RT. Protein bands were detected using the electrochemiluminescence reagent and captured. β-actin was used as the control.
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7

Western Blot Analysis of TMEFF1 and GAPDH

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The protein levels of TMEFF1 and GAPDH were determined by western blotting. NAc tissues were lysed on ice using radioimmunoprecipitation assay lysis buffer (Solarbio, Beijing, China), and the total protein concentrations were established with a bicinchoninic acid protein assay kit (Solarbio, Beijing, China). The protein lysates were loaded and separated using sodium dodecyl–sulfate polyacrylamide gel electrophoresis before being moved to a polyvinylidene difluoride membrane. The blots were incubated with primary antibodies against TMEFF1 (1:1,000 dilution; sc-393 457; Santa Cruz Biotechnology, Dallas, TX, USA) and GAPDH (1:2,000 dilution; sc-47 724; Santa Cruz Biotechnology), then washed with Tris-buffered saline and incubated with IRDye 800CW goat anti-rabbit (LI-COR Biosciences, Lincoln, NE, USA) or IRDye 680RD goat anti-mouse (LI-COR Biosciences) secondary antibody for 1 hour at 37°C. The nitrocellulose membrane was then washed with Tris-buffered saline, and densitometric analysis was completed using appropriate channels (Odyssey; LI-COR Biosciences).
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8

Quantification of CLEC4M Protein Expression

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Total protein was extracted from 9 HCC tissue samples using RIPA lysis buffer (Beijing Solarbio Science & Technology Co., Ltd.) supplemented with a protease inhibitor cocktail (cat. no. 11697498001; Roche Diagnostics). The protein was then quantified using a bicinchoninic acid protein assay kit (Beijing Solarbio Science & Technology Co., Ltd.) according to the manufacturer's instructions. Equal amounts (50 µg) of protein were separated via SDS-PAGE on a 12% gel, and transferred to PVDF membranes. Subsequently, the membranes containing the separated proteins were blocked with 5% BSA for 2 h at room temperature. Next, the membranes were probed with primary antibodies against CLEC4M (1:1,000; cat. no. #ab169783; Abcam) overnight at 4°C. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (1:2,000 dilution; cat. no. HS201-01; Beijing Transgen Biotech Co., Ltd.) for 1 h at room temperature. Protein bands were visualized using an electrochemical luminescence reagent (Thermo Fisher Scientific, Inc). β-actin (anti-β-actin antibody; 1:1,000; cat. no. sc-47778; Santa Cruz Biotechnology, Inc.) was used as an endogenous control. Densitometry of blot was analyzed by Image J software (version 1.45). Protein expression was subsequently quantified with densitometry and normalized by β-actin.
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9

Protein Expression Analysis of AML12 Cells

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Radioimmunoprecipitation assay lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China) were used to extract the total protein from AML12 cells and liver tissues. The protein concentration was determined by Bicinchoninic Acid Protein Assay kit (Solarbio Science & Technology Co., Ltd.). Equal samples of protein (30 µg) were separated by SDS-PAGE on 12% gels and transferred onto a polyvinylidene difluoride membrane. The membrane was blocked with 5% skim milk for 1 h at room temperature. The membrane was then incubated with mTOR, p-mTOR, GAPDH, LC3 II, caspase-3 and p62 (all 1:1,000) primary antibodies overnight at 4°C. The membranes were then washed with TBS-Tween-20 at room temperature (5 min/wash). Subsequently, the membrane was treated with HRP-conjugated goat anti-rabbit and anti-mouse IgG secondary antibodies (both 1:2,500), agitated and incubated at room temperature for 1 h. The protein bands were visualized by using a G:BOX imaging system (Gene Company, Ltd., Hong Kong, China). The protein bands were measured with ImageJ 1.48v software and normalized to the corresponding GAPDH bands. The relative density of each target protein normalized to the control was used to represent the changes in expression of target proteins.
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10

Comprehensive Protein Expression Analysis

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Total protein was obtained by a RIPA buffer (Beyotime, Shanghai, P.R. China) and quantified with bicinchoninic acid protein assay kit (Solarbio, Shanghai, P.R. China).6 (link) The same quantity of protein (30 µg per lane) was separated by 10% SDS-PAGE. The proteins were incubated with primary antibodies overnight at 4°C against C14orf159 and GAPDH (1:200 and 1:3,000; Sigma-Aldrich Co.), p-ERK, ERK, p-P90RSK, P90RSK, p-P38, P38, p-P65, P65, p-AKT, AKT, Cyclin A2, Cyclin B1, Cyclin D1, Myc-tag, Vimentin, Snail, Slug (1:1,000; BD Transduction Laboratories, Lexington, KY, USA), E-cadherin, N-cadherin, Zo-1 and Occludin (1:1,000; Cell Signaling Technology, Danvers, MA, USA). After incubating with anti-mouse or anti-rabbit IgG (BD Transduction Laboratories) at 37°C for 2 hours, the membranes were developed with enhanced chemiluminescence reagent (Solarbio).
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