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4 protocols using na934

1

Antibody Validation for Histone Modifications

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The following antibodies were used: Set2 (raised in lab, 1:5000), G6PDH (Sigma-Aldrich A9521, 1:100,000), H3K36me3 (Abcam 9050, 1:1000 for ECL, 1:2000 for LI-COR, and 2 μL for ChIP), H3K36me2 (Active Motif 38255, 1:1000 for ECL and 1:2000 for LI-COR), H3K36me1 (Abcam 9048, 1:1000 for ECL and 1:2000 for LI-COR), H3K79me3 (Abcam 2621, 1:2000), H3 (EpiCypher 13-0001, 1:1000) (Supplemental Fig. S1C) (Abcam 12079, 1:1000; CST 14269, 1:2000 for LI-COR, and EMD MilliporeSigma 05-928 2 µL for ChIP) (Supplemental Fig. S1E). Rabbit (Amersham NA934, Donkey anti-Rabbit), goat (Santa Cruz 2768, Rabbit anti-Goat), rabbit (Thermo Fisher Scientific SA5-10044, Donkey anti-Rabbit DyLight 800), and mouse (Thermo Fisher Scientific 35518, Goat anti-mouse DyLight 680) secondary antibodies were used at 1:10,000.
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2

Protein Expression Analysis of Primary Osteoclasts

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Protein cell lysates were harvested from primary osteoclasts in modified RIPA buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1% IGEPAL, 0.25% sodium deoxycholate, 1 mM EDTA) supplemented with Halt Protease & Phosphatase Inhibitor Cocktail (Thermo Scientific). Lysates were cleared by centrifugation. Proteins were resolved by SDS-PAGE, transferred to PVDF membrane (Millipore). Blots were blocked in TBS/0.1% Tween-20 (TBST) plus 5% nonfat dry milk then incubated at 4°C overnight with primary antibodies diluted in TBST plus 5% bovine serum albumin. Primary antibodies used are included in Table 2. The next day, blots were washed with TBST, and then they were incubated for 1 hour at room temperature with horseradish-peroxidase conjugated secondary antibodies diluted in TBST plus 5% nonfat dry milk. Secondary antibodies used were from G.E. Health Systems: Amersham ECL anti-mouse (NA-931) and anti-rabbit (NA-934) at 1:6000, or Santa Cruz: anti-goat (SC-2020) at 1:6,000 dilution. Blots were then washed in TBST again before antibody binding was detected using a western blotting detection kit (Western Bright Quantum, Advansta) and the ChemiDoc Imaging System (Bio-Rad). Histone 3 (H3) or actin was used as a loading control for all blots.
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Characterization of Tao-1 and TAO1 Binding to GCKIII Kinases

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Immunoblotting and co-immunoprecipitation experiments were performed as described (Hergovich et al., 2005 (link)). The characterization of Tao-1 and TAO1 binding to GCKIII kinases was carried out in low-stringency buffer as defined previously (Cook et al., 2014 (link)). Anti-HA antibodies were from Cell Signaling (C29F4) and Roche (3F10). Anti-myc antibodies were from Santa Cruz Technology (9E10) and Cell Signaling Technology (71D10). Anti-MST3 (611057) was from BD Biosciences, anti-MST4 (3822) was from Cell Signaling Technology, anti-STK25 (sc-6865) and anti-actin (sc-1616) were from Santa Cruz Biotechnology. anti-Mal (Maltose binding protein; E8032) is from New England BioLabs. The antibody detecting activation loop phosphorylation of GckIII (Thr167), MST3 (Thr190), MST4 (Thr178) and STK25 (Thr174) was from Abcam and termed anti-T167-P or anti-GCKIII-P, respectively. The antibody detecting hydrophobic motif phosphorylation of Trc (Thr449) has been described (Tamaskovic et al., 2003 (link)). Secondary antibodies were purchased from GE Healthcare (NA931, NA934, and NA935) and Santa Cruz Biotechnology (sc-2020).
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Western Blot Analysis of Oocyte Proteins

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For western blot, 25–50 oocytes per sample were collected. Alternatively, cell lysates (input) or protein immunoprecipitates were collected as described above. Samples were heated at 95°C for 5 min with 1× sample buffer (NuPage LDS sample buffer, Invitrogen) with NuPage antioxidant (Invitrogen). Proteins were separated on 4–12% gradient NuPage bis–tris precast gels (Invitrogen) in MES–SDS running buffer (Formedium). Proteins were blotted onto nitrocellulose membranes (Amersham) at a constant current of 400 mA for 1 h. Membranes were blocked in 5% skimmed milk in PBST for 1 h at room temperature and incubated with primary antibodies (EMI2—Everest Biotech EB0606, Flag tag—Sigma F1804, p44/42 MAPK—Cell Signalling 91069, tubulin α—AbD Serotec MC178G) at 4°C overnight with secondary antibodies (Vector Laboratories PI-9500, GE Healthcare NA93 and NA934, Santa Cruz Biotechnology SC-2032) for 1–2 h at room temperature. The detection was performed, using ECL Prime or ECL Advanced (Amersham) and Kodak X-Ray films.
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