The largest database of trusted experimental protocols

3 protocols using anti spectrin mab1622

1

Analyzing Autophagy and Ubiquitination Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Commercially available antibodies were used in Western blots (WBs), for the detection of sacsin (anti-sacsin AbC ab181190, Abcam, Cambridge, UK), spectrin (anti-spectrin MAB1622, Merck Millipore, Burlington, MA), ubiquitinated proteins (anti-ubiquitin ab134953, Abcam), p62 (anti-p62/SQSTM1 P0067, Merck Millipore), LC3I-II (anti-LC3A/B ab58610, Abcam), and HA (anti-HA Epitope Tag 16b12, Biolegend, San Diego, CA). Secondary antibodies included horseradish peroxide–conjugated anti-mouse and anti-rabbit immunoglobulin G (Amersham Bioscience, Buckinghamshire, UK).
In vitro treatments were carried out with different compounds: 1 µM MG-132, 24 or 3 hours (Merck Millipore); 20 µM chloroquine, 24 hours (Merck Millipore); or together (0.25 µM MG-132 + 10 µM chloroquine, 18 hours). After the treatments, cells were harvested and lysed for biochemical assays.
+ Open protocol
+ Expand
2

Western Blot Detection of Cell Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lenses were re-suspended (50 μl, 10 min) in detergent lysis buffer (1% IGEPAL, 50 mM Tris-HCL, 150 mM NaCl, pH 7.8) containing Halt Protease Inhibitor (ThermoFisher) then centrifuged (10,000 × g, 10 min) to pellet cell nuclei. Post-nuclear lysate was removed and soluble protein concentration was determined using the Non-interfering assay (G-Bioscience, St. Louis, MO). Soluble proteins (20-40 μg) and molecular weight markers (10-250 kDa, Li-Cor, Lincoln, NE) were separated on SDS-PAGE gels (4-12% gradient mini-gels, ThermoFisher) then transferred onto nitrocellulose and serially incubated with primary antibody followed by species-appropriate IRDye 680LT and/or IRDye 800CW secondary antibody (1:30,000 dilution, Li-Cor). Protein bands were visualized using an Odyssey Infrared Imaging System (Li-Cor) running Image Studio (v 5.2) software. Primary antibodies used were, anti-caspase-12 (#2202, Cell Signaling Technology, CST, Danvers, MA), anti-spectrin (MAB1622, EMD Millipore, Billerica, MA), and anti-p62 (GP62-C, Progen, Heidelberg, Germany), and anti-β-actin (#3700, CST) to control for sample loading.
+ Open protocol
+ Expand
3

Western blot analysis of autophagy markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Commercially available antibodies were used in Western blots (WB), for the detection of sacsin (Anti-sacsin AbC ab181190. Abcam, Cambridge, UK), spectrin (Anti-spectrin MAB1622 Merck Millipore, Burlington, MA, USA), ubiquitinated proteins (Anti-ubiquitin ab134953, Abcam), p62 (Anti-p62/SQSTM1 P0067 Merck Millipore), LC3I-II (Anti-LC3A/B ab58610. Abcam), HA (anti-HA Epitope Tag 16b12, Biolegend, San Diego, CA, USA). Secondary antibodies included HRP-conjugated anti-mouse and anti-rabbit IgG (Amersham Bioscience, Buckinghamshire, UK).
In vitro treatments were carried out with different compounds: 1 µM MG-132 24 hours or 3 hours (Merck Millipore), 20 µM Chloroquine (CQ) 24 hours (Merck Millipore) or together (0.25 µM MG-132 + 10 µM CQ, 18 hours); protease inhibitors (5 µM E64, 10 µM Bestatin, 5 µM Pepstatin, 48 hours (Merck Millipore)). After the treatments, cells were harvested and lysed for biochemical assays.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!