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7 protocols using p iκbα

1

Angiogenesis Inhibition Assay Protocol

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Ethanol, fibrinogen, aprotinin, thrombin and Pyrrolidine dithiocarbamate (PDTC) were purchased from Sigma Chemical Co. (St. Louis, MO). Cyanidin-3-glucoside (C3G) was prepared as previously described [38 (link)]. Anti-MCP1 and anti-VEGF antibodies were obtained from Abcam (Cambridge, MA). Anti-NF-κB p65, IκBα, p-IκBα and anti-LMNB1 antibodies were purchased from Protein Tech Group (Chicago, IL, USA). Anti-β-actin was obtained from Cell signaling Technology (Danvers, MA). Anti-CD31 antibody was obtained from BD Pharmingen (San Diego, CA). Reactive oxygen species detection reagents were obtained from Invitrogen Molecular Probes (Eugene, OR). MTT assay kit was purchased from Roche Molecular Biochemicals (Indianapolis, IN). Matrigel Invasion Chambers were purchased from BD Biosciences (Bedford, MA). Cytodex 3 beads were purchased from Amersham Pharmacia Biotech (Piscataway, NJ).
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2

Protein Extraction and Western Blot Analysis

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Cells were lysed by shaking in radioimmunoprecipitation assay (RIPA) lysis buffer supplemented with protease inhibitor (Nanjing Key Gen Biotech Co., Ltd., Nanjing, China). The protein concentration was measured by the bicinchoninic acid (BCA) assay (Beijing Trans Gen Biotech Co., Ltd. Beijing, China). Cell extract (50 μg) was applied to a sodium dodecyl sulphate (SDS)-polyacrylamide gel electrophoresis, transferred to a polyvinylidene fluoride (PVDF) membrane, and then blocked with PBST containing 5% skimmed milk for 2 h. The membrane was incubated at 4 °C with primary antibodies (TLR4, 1:500; Myd88, 1:1000; iNOS, 1:1000; CD206, 1:2000; Arg-1, 1:1000 [Abcam]; IKK-β, 1:500; p-IKK-β, 1:200; IκBα, 1:1000; p-IκBα, 1:1000; NF-κB, 1:1000; p-NF-κB, 1:1000; GAPDH, 1:2000; α-tubulin, 1:1000; and β-tubulin, 1:1000 [Proteintech]) overnight. On the next day, the membrane was washed four times for 8 min each with PBST and incubated with HRP-anti-rabbit secondary antibody (1:5000; Proteintech) for 1 h. The bands were visualised by enhanced chemiluminescence kit (Advansta, Menlo Park, CA, USA), and the results were analysed using Quantity One (Bio-Rad Laboratories, Inc. Hercules, CA, USA) software. GAPDH, α-tubulin, and β-tubulin were used as internal references.
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3

Investigating Inflammatory Pathways

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CGA (#C3878) was purchased from Sigma-Aldrich (St. Louis, United States ). CGA was resolved in dimethyl sulfoxide and then sterile filtered before used and dissolved in distilled water. Rabbit-anti-mouse polyclonal primary antibodies against Toll like receptor 4 (TLR4), nuclear transcription factor-κB (NF-κB), p-NF-κB, inhibitor of NF-κB-α (IκB-α), p-IκB-α, β-actin, zonula occludens-1 (ZO-1), and Occludinwere purchased from Proteintech group. Goat-anti-rabbit secondary antibodies were purchased from Cell Signaling Technology.
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4

Studying Tec Kinase Role in Renal Tubular Cells

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Mouse renal tubular epithelial cell line NRK-52E cells was obtained from the Chinese Type Culture Collection (Shanghai Institute of Cell Biology, China) and were inoculated in a sterile culture flask containing calf serum high-glucose DMEM at 37°C in a humidified atmosphere of 5% CO2. When growing together like cobblestones, the cells were seeded on 6-well BioFlex collagen-coated culture plates and grown to 80% confluence. The FBS concentration was reduced to 1% 24 hours prior to the experiments. The cells were stimulated with LPS (Sigma, St. Louis, MO) of different concentrations and duration. To study the role of Tec kinase in renal tubular epithelial cells, different concentrations of LFM-A13, a leflunomide metabolite analogue, were added to the cells 1 h before stimulation with LPS.
The reagents used in this study were purchased from the following sources: LFM-A13 from Tocris Bioscience and Tec siRNA from Genepharma Co., Ltd. (Shanghai, China); and all monoclonal antibodies for NF-κB p-p65, p65, IκBα, and p-IκBα were purchased from Protein Tech Group (Chicago, IL, USA). The antibodies for Tec protein, TLR4, MyD88, and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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5

Protein Extraction and Western Blot Analysis

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The proteins of liver samples were extracted with the RIPA buffer (Solarbio, Beijing, China), followed by centrifuging at 12,000 g for 15 min. Subsequently, the concentration of each protein sample was detected using the BCA Protein Assay Kit (Beyotime, Jiangsu, China). Finally, the protein sample was separately mixed with loading buffer and denatured in boiling water for 5 min.
The electrophoretic separation of the prepared proteins was performed on the sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and transfered to polyvinylidene fluoride (PVDF) membranes (Millipore, United States). The membranes were incubated with the primary antibodies overnight at 4°C: Akt, p-Akt, PI3K, p-PI3K, FAK, p-FAK, mTOR, p-mTOR, NF-κB p65, p-NF-κB p65 (1:1,000, Cell Signaling Technology Inc., Beverly, MA), IκBα, p-IκBα, IKKα/β, p-IKKα/β, Bcl-2, Bax, Caspase-3, and GAPDH (1:1,000, Proteintech, Chicago, IL), α-SMA, Col-I and Col-Ⅲ (1:500, Proteintech, Chicago, IL). The membranes were washed three times with TBST buffer, followed by incubation in the dark with fluorescence-labeled rabbit/mouse anti-goat IgG (Licor, United States) at 1:10,000 dilution under agitation for 1 h at room temperature. Finally, the membranes were scanned and quantified by Image Studio Lite software (LI-COR Biosciences, NE, United States).
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6

Quantitative Protein Analysis by Western Blot

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Protein sample concentrations were measured by BCA assay kit and 20 μg/mL subjected to Western blotting (WB), following electrophoresis in 12% SDS-PAGE. WB was conducted as follows: protein samples were blocked onto an immobilon-polyvinylidine difluoride (PVDF) membrane (Immobilon, Germany) by Bio-Rad Mini-Protran electroblotting system (Bio-Rad, China). Membrane was blocked with 5% skimmed milk powder (BD, USA) for 2 h at room temperature. Membranes were probed with antibodies for GAPDH, AKT, Syk, IκB-α (Proteintech, China) phosphorylated (P)-AKT P-Syk and P- IκB-α (CST, USA). AKT primary antibodies were used at 1:3000 dilution, GAPDH primary antibodies at 1:10,000 dilution and others at 1:1000 dilution, in primary antibody dilution reagent (Beyotime, Shanghai, China). Samples were incubated overnight at 4 °C and washed 3 times with TBST (Solarbio, Beijing, China) for 10 min. Membranes were incubated with secondary antibodies at 1:3000 dilution for 1 h, including HRP-linked goat anti-mouse IgG (CST, USA), HRP-linked rabbit anti-goat IgG (CST, USA), HRP-linked goat anti-rabbit IgG (CST, USA), then washed 4 × 5 min with TBST. To strengthen the chemiluminescence, membranes were visualized by ECL (Beyotime, China).
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7

Western Blot Analysis of Cellular Proteins

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Radioimmunoprecipitation analysis (RIPA) lysis buffer (Solarbio) was used to extract proteins from NPCs and rat intervertebral discs, and BCA protein assay kits (Cowin, Beijing, China) were used to quantify proteins. Proteins were separated by 10% SDS-PAGE and then transferred to polyvinylidene fluoride membranes (Millipore, Billerica, USA), blocked for 30 min using Rapid Blocking Solution (Beyotime, Beijing, China), and incubated with the appropriate primary antibodies overnight at 4°C. The membranes were then washed three times with TBST and subsequently incubated with the corresponding HRP-conjugated secondary antibody at room temperature for 2 h. Afterwards, the membranes were washed again for three times with TBST. After washing, the chemiluminescence intensity of the blots was detected using ECL (Millipore) and a chemiluminescence system (Bio-Rad). The following antibodies were used: GAPDH (1:5000 dilution; Proteintech, Rosemont, USA), CD63/CD81/TSG101/calnexin (1:1000 dilution; Abcam, Cambridge, USA), Bax, Bcl-2, Caspase-3, TRAF6, IκBα, p-IκBα, p65, and p-p65 (1:1000 dilution; Proteintech), and HRP-conjugated goat anti-mouse/rabbit secondary antibody (1:5000 dilution; Proteintech).
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