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7 protocols using bi 2536

1

Inhibition of PLK-1 and c-Myc in D17 Cells

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The D17 cell line, known to overexpress PLK‐1 and c‐Myc proteins, was selected for inhibition experiments using BI 2536 (Boehringer Ingelheim, Ingelheim, Germany).32 A 10 mM stock solution of BI 2536 was prepared by resuspending the compound in dimethyl sulfoxide (DMSO). D17 cells treated with DMSO were used as control. First, 3 × 105 cells/well were seeded in six wells cell culture plates and were then treated with BI 2536 at 2.5, 5, 7.5, and 15 nM for 12 and 24 h. Morphological changes were evaluated with a Leica AF6000 LX (Leica Microsystems, Wetzlar, Germany) microscope equipped with a Leica DFC350FX digital camera controlled by the LAS AF software (Leica Microsystems). Based on morphological effect, viability assay was performed using CellTiter 96 AQueous One Solution Cell Proliferation Assay (Promega, Madison, WI) on 1 × 106 cells/well at 2.5, 5, 7.5, and 15 nM for 12 and 24 h. Similarly, caspase activity for apoptosis detection was evaluated using Caspase‐Glo 3/7 Assay System (Promega, Madison, WI) according to the datasheet after 12 and 24 h of treatment at 2.5, 5, and 7.5 nM. The untreated D17 cell line was used as control while the medium was used as blank to subtract background signal. All experiments were performed in triplicate and repeated three times.
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2

Cell Line Cultivation and Compound Preparation

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CLBL-1 cells were kindly provided by Dr Barbara Rütgen (University of Wien, Austria). The KLR-1201 cell line was developed in the Drs. Angela McCleary-Wheeler and Kristy Richards’ laboratories (Cornell University, Ithaca, NY, USA). Both cell lines were cultured in IMDM supplemented with fetal bovine serum (10% for CLBL-1; 20% for KLR-1201), 1% glutamine, 100 μg/mL penicillin, and 100 μg/mL streptomycin. BI2536 and MZ1 compounds were purchased from Boehringer Ingelheim (Ingelheim am Rhein, Germany) and were dissolved in dimethyl sulfoxide (DMSO) at 10 µM stock solution.
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3

Kinase Inhibition in Larval Zebrafish

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Individual larvae aged 3 dpf were placed in 100 μL of E3/PTU embryo medium containing 100 μM BI 2536 (Boehringer Ingelheim) in 1% DMSO, or 1% DMSO at 28 °C (Sigma Aldrich, St. Louis, MO). The 100 μM concentration was selected after testing a range of doses from 1 to 100 μM (Supplemental Fig. 2), initially suggested by Jeong et al., 2010 (link). After incubating for 10 or 24 h, 4 dpf larvae were rinsed in E3/PTU medium for 15 min, then either imaged live or fixed and processed for phospho-S129 staining.
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4

Kinase Inhibition in Larval Zebrafish

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Individual larvae aged 3 dpf were placed in 100 μL of E3/PTU embryo medium containing 100 μM BI 2536 (Boehringer Ingelheim) in 1% DMSO, or 1% DMSO at 28 °C (Sigma Aldrich, St. Louis, MO). The 100 μM concentration was selected after testing a range of doses from 1 to 100 μM (Supplemental Fig. 2), initially suggested by Jeong et al., 2010 (link). After incubating for 10 or 24 h, 4 dpf larvae were rinsed in E3/PTU medium for 15 min, then either imaged live or fixed and processed for phospho-S129 staining.
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5

Preparation and Storage of Pharmacological Compounds

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The following drugs were dissolved in DMSO and stored at −20°C: WEHI-539 [32 (link)] (Apexbio); taxol (Sigma); nocodazole (Sigma); AZ138 [8 (link)] (AstraZeneca)); AZ3146 [43 (link)] (AstraZeneca); BI 2536 [38 (link)] (Boehringer Ingelheim); GSK923295 [39 (link),70 ]; MLN8054 [41 (link)] (Millennium Pharmaceuticals); ZM447439 [42 (link)] (Tocris); A-1210477 [31 (link)] (Medchemexpress). Tetracycline (Sigma) was dissolved in water, stored at −20°C, and used at concentrations indicated in the figure legends. Thymidine (Sigma) was dissolved in PBS at a concentration of 200 mM, and stored short-term at 4°C.
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6

Culturing U2OS Cells for Plk1 and Bora Studies

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Human osteosarcoma U2OS cells were grown in Dulbecco’s modified Eagle’s medium (DMEM, Gibco) supplemented with 6% FCS (Lonza), 2 mM l-glutamine, 100 U/ml penicillin, and 100 mg/ml streptomycin. Cell lines expressing LAP-Plk1, AKAP-LAP-Plk1, H2B-LAP-Plk1, and GFP-Bora under the control of tetracycline-inducible were cultured in DMEM containing Tet system approved fetal bovine serum (Lonza). Antibodies that were used were directed against Plk1 (18 (link), 19 (link)), Plk1, Cyclin B1, Actin (all from Santa Cruz), GFP (Roche), Plk1-pT210 (BD), Tubulin (Sigma), Bora (17 (link)), Aurora A (Cell Signaling) Histone H3-pS10, and H2AX (both from Upstate). The following drugs were used: BI 2536 (100 nM, Boehringer Ingelheim Pharma), MLN8054 (1 μM, Millennium Pharmaceuticals), thymidine (2.5 mM, Sigma), caffeine (5 mM, Sigma), adriamycin (0.5 μM, Sigma), nocodazole (250 ng/ml, Sigma), PI (Sigma) puromycin (Sigma, 2 μg/ml), and tetracyclin (Sigma, 1 μg/ml).
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7

Cell Lines and Small Molecule Inhibitor Treatments

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TA-HeLa, DLD-1, RKO and RPE-1 cells expressing GFP-tagged histone H2B were as described [26 (link)]. All cell lines were cultured in DMEM plus 10% fetal calf serum (LifeTechnologies), 2 mM glutamine, 100 U/ml penicillin and 100 U/ml streptomycin (Lonza). All lines were grown at 37°C in a humidified 5% CO2 incubator. Small molecule inhibitors dissolved in DMSO were as follows: BI 2536 (Boehringer Ingelheim); monastrol (Sigma); CYC140844 (Cyclacel Ltd. (Cyclacel Ltd.)); BI 6727, MLN0905 (Axon MedChem), RO3280, MK-1775 (Selleck Chemicals); TAK-960 (R&D Systems); MLN8054 (Millennium Pharmaceuticals). Thymidine (Sigma), dissolved in water and filter sterilized was used at 2 mM.
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