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30 protocols using f3777

1

Immunostaining of Liver Tissue Sections

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Liver frozen sections (6 μm) were prepared and immunostained for α-smooth muscle actin levels (α-SMA, fibroblast, 1:750, F3777, Sigma-Aldrich), CD4-positive T cells (CD4, 1:90, 553043), CD8-positive T cells (CD8, 1:100, 01041D), CD68-positive macrophages (CD68, 1:100, 137002, BioLegend, San Diego, CA), and MHC class-II-positive areas (MHC II, 1:350, 556999) (all from eBioscience, San Diego, CA). Quantitative data of CD4+ T-cell numbers, CD8+ T-cell numbers, MHC class-II- and CD68-positive areas were taken and analyzed via color measurement using the software Image-Pro Plus 6.0.
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2

Cell-Specific TLR7 Expression in Atherosclerosis

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Cell type (macrophage, SMC, and EC)-specific expression of TLR7 in mouse atherosclerotic lesions was determined by immunofluorescent double staining using rabbit anti-mouse TLR7 monoclonal antibody (1:100, ab45371, Abcam) together with rat anti-mouse Mac-2 monoclonal antibody (macrophages, 1:100, CL8942AP, CEDARLANE, Burlington, NC), purified rat anti-mouse CD31 monoclonal antibody (EC, 1:900, #553370, BD Biosciences), and FITC-conjugated mouse anti-α-smooth muscle actin monoclonal antibody (SMC, 1:500, F3777, Sigma-Aldrich). Mouse aortic arch lesion macrophage and SMC apoptosis was also detected by immunofluorescent double staining with Alexa Fluor® 594-conjugate cleaved caspase-3 (Asp175) (D3E9) rabbit monoclonal antibody (1:200, #8172, Cell Signaling Technology, Danvers, MA) together with rat anti-mouse Mac-2 monoclonal antibody or FITC-conjugated mouse anti-α-smooth muscle actin monoclonal antibody as mentioned above. Images were collected under an Olympus FluoView™ FV1000 Confocal Microscope.
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3

Immunohistochemical Analysis of Pulmonary Vessel Neovascularization

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Paraffin-embedded thick sections of lung samples (5 μm thickness) were mounted on SuperFrostPlus slides (Thermo Scientific, Villebon sur Yvette, France). Slices were saturated with human serum (10%) in PBS for 1 h at room temperature. We used primary antibodies against SUR2A (1/100), SUR2B (1/100), or Kir6.1 (1/100) against α-Smooth Muscle Actin (α-SMA, Sigma, F3777) (1/200). Primary Antibody was detected with the secondary antibodies goat anti-mouse and goat anti-rabbit (1/400). Slides were counterstained with 4′,6′-diamidino-2-phénylindole (DAPI).
Pulmonary vessel neovascularization was evaluated by immunostaining against alpha-SMA-FITC (SMC marker F3777 Sigma)/Von Willebrand Factor (endothelial marker, A0082 DAKO). Immunostaining was quantified under an LSM 700 microscope (Carl Zeiss, Le Pecq, France). Images were recorded and analyzed with ZEN software (Carl Zeiss).
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4

Immunohistochemical Analysis of Brain Vasculature

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Brain sections were immunostained with anti-laminin γ1 (Abcam, AB3297, 1:200), anti-laminin-111 (Sigma, L9393, 1:1000), anti-laminin α2 (Sigma, L0663, 1:200), anti-laminin α4 (R&D system, AF3837, 1:200), anti-AQP4 (Millipore, AB3594, 1:500), anti-occludin (Invitrogen, 71-1500, 1:500), anti-ZO-1 (Invitrogen, 40-2200, 1:500), anti-Claudin-5 (Invitrogen, 34-1600, 1:500), anti-CD31 (BD Pharmingen, 550274, 1:200), anti-PDGFRβ (eBioscience, 14-1402-82, 1:200 and Cell Signaling, 3169S, 1:200), anti-CD13 (BD Pharmingen, 558744, 1:200), anti-Cre recombinase (Novagen, 69050, 1:2000), or anti-Ki67 (Millipore, AB9260, 1:1000) antibodies overnight at 4°C, followed by fluorescent secondary antibodies (Invitrogen) for 1 hour at room temperature. FITC-conjugated SMA (Sigma, F3777, 1:1000) was used to study pericyte differentiation and distinguish capillaries and large vessels, given that SMA is expressed in arterioles and arteries but not capillaries under normal conditions. After mounting, the brain sections were examined and photographed with an Axiovert 200 (Zeiss) microscopy or Leica confocal microscopy. For quantification, at least 9 random images (from at least 3 animals) with GFP or Cre signal at 200X magnification were taken and the mean fluorescence intensity was analyzed.
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5

Assessing Pulmonary Fibrosis in Bleomycin-Treated Mice

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Mice were sacrificed at various time points after bleomycin treatment under anesthesia. The trachea was cannulated, and the left lungs were inflated with 0.5 mL of 10% neutral buffered formalin. Mouse lung tissue was fixed, embedded in paraffin, sectioned to 5 μm slices for Masson’s trichrome13 (link)49 (link) and BMPER staining. Anti-BMPER (ab75183, 1:200, Abcam) and anti-rabbit HRP-DAB cell and tissue staining kit were used according to the manufacturer’s instructions (R&D systems, Minneapolis, MN, USA). The semiquantitative Ashcroft score was used to score pulmonary fibrosis50 (link). In short, upon 200× magnification, each successive field was given a score ranging from 0 (normal) to 8 (total fibrous obliteration of the field). All scores from 5 sections were averaged41 (link).
Paraffin-embedded sections of normal and IPF lungs were used for immunofluorescence staining. Antibodies specific for BMPER (ab75183, 1:200, Abcam) and α-SMA (F3777, 1:250, Sigma, St. Louis, MO, USA) were used for staining. Alexa Fluor-546-conjugated secondary antibody was from Life Technologies. The nucleus were labeled with DAPI (Vector lab, Burlingame, CA, USA), photographed with a Leica TCS SP5 confocal microscope, and analyzed with Leica confocal software.
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6

Immunofluorescence Staining of Cerebral Vasculature

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Mice were perfused with ice-cold phosphate-buffered saline (PBS) followed by 4% paraformaldehyde (PFA) in PBS. The extracted brain was fixed with 4% PFA for 4 h at 4 °C. Samples were cut into 150-µm thick coronal sections using a vibrating microtome (Leica) and post-fixed with 4% PFA for 30 min at 4 °C. For immunofluorescence staining, samples were permeabilized and blocked for 1 h at room temperature with a blocking buffer containing 5% donkey or goat serum in 1% Triton X-100/1 × PBS. Samples were then incubated overnight at 4 °C with the following primary antibodies: anti-αSMA–FITC (mouse monoclonal, F3777, Sigma-Aldrich, 1:400) for vascular smooth muscle cells; anti-collagen IV (rabbit polyclonal, ab6586, Abcam, 1:400) for the basement membrane; and anti-GFAP (chicken polyclonal, ab4674, Abcam, 1:400) for astrocytes. After washing several times with PBS, samples were incubated overnight at 4 °C with Alexa Fluor-conjugated secondary antibodies (Alexa 488-, 647-conjugated, Jackson ImmunoResearch). After washing several times with PBS, the samples were mounted with mounting medium (Vectashield, Vector Laboratories).
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7

Quantifying Immunolabeling in Frozen Tissue Sections

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Thin frozen sections (5 μm) were immunolabeled and quantitation of immunolabeling was performed as previously described(34 (link)). Antibodies related information for stainings on mouse tissues and cells: PGC1-a (1:200; clone 4C1.3, Calbiochem™ ST1202), Twist (1:200; Santa Cruz Biotechnology, inc. H-81), CK8 (1:200; DSHB TROMA-I) and αSMA (1:200; clone 1A4, Sigma-Aldrich® F3777).
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8

Immunohistochemical Analysis of Brain Vasculature

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Brain sections were immunostained with anti-laminin γ1 (Abcam, AB3297, 1:200), anti-laminin-111 (Sigma, L9393, 1:1000), anti-laminin α2 (Sigma, L0663, 1:200), anti-laminin α4 (R&D system, AF3837, 1:200), anti-AQP4 (Millipore, AB3594, 1:500), anti-occludin (Invitrogen, 71-1500, 1:500), anti-ZO-1 (Invitrogen, 40-2200, 1:500), anti-Claudin-5 (Invitrogen, 34-1600, 1:500), anti-CD31 (BD Pharmingen, 550274, 1:200), anti-PDGFRβ (eBioscience, 14-1402-82, 1:200 and Cell Signaling, 3169S, 1:200), anti-CD13 (BD Pharmingen, 558744, 1:200), anti-Cre recombinase (Novagen, 69050, 1:2000), or anti-Ki67 (Millipore, AB9260, 1:1000) antibodies overnight at 4°C, followed by fluorescent secondary antibodies (Invitrogen) for 1 hour at room temperature. FITC-conjugated SMA (Sigma, F3777, 1:1000) was used to study pericyte differentiation and distinguish capillaries and large vessels, given that SMA is expressed in arterioles and arteries but not capillaries under normal conditions. After mounting, the brain sections were examined and photographed with an Axiovert 200 (Zeiss) microscopy or Leica confocal microscopy. For quantification, at least 9 random images (from at least 3 animals) with GFP or Cre signal at 200X magnification were taken and the mean fluorescence intensity was analyzed.
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9

Quantifying Actin Stress Fibers in Cells

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HLMFs were grown on 8-well chamber slides and serum-starved for 24 h prior to the experiment. The cells were left unstimulated and incubated in the presence of 0.1% ethanol vehicle control or LXA4 at 10−10 M and 10−8 M for 48 hours. Cells were then immunostained as described previously(27 (link)) using FITC-conjugated mouse monoclonal anti-αSMA (F3777, 10 μg/ml, Sigma) and isotype control FITC-conjugated mouse IgG2a (X0933, 10 μg/ml, Dako, Ely, UK). Cells were mounted with fluorescent mounting medium and cover-slipped. Original images were captured on an epifluorescent microscope (Olympus BX50, Olympus UK Ltd, Southend-on-Sea); grey scale intensity was examined using Cell F imaging software (Olympus UK Ltd). Matched exposures were used for isotype controls.
Actin stress fibres were calculated using a specialised macro on image J designed by Dr Kees Straatman, University of Leicester(15 ). The macro is capable of providing a quantitative, unbiased score of the number of stress fibres per individual cell by determining the fluctuations of grey scale intensity created by the αSMA staining within the stress fibres.
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10

Immunohistochemical analysis of murine aortic tissues

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Mouse aortic tissues were harvested and embedded in optimal cutting temperature (OCT) compound, and aorta segments at 6 μm were prepared as described previously.16 (link),17 (link) The serial sections were stained with antibodies for macrophages (Mac-3, 1:900, 553322, BD Biosciences, San Jose, CA), T cells (CD4, 1:90; 553043, and CD8, 1:100, 01041D, BD Biosciences), major histocompatibility complex class-II MHC-II) (1:250, 556999, BD Biosciences), smooth muscle cell (SMC) (α-actin, 1:750, F3777, Sigma-Aldrich), CD31 (1:1500, 553370, BD Biosciences) and neutrophils (Ly6G, 1:200, BE0075, BioXcell, West Lebanon, NH). CD4+ and CD8+ T cells, and CD31+ microvessels were counted blindly and presented as numbers of total cells per mm2 of lesion area. Ly6G+ neutrophils were counted and presented as number of cells per section. MHC-II-positive and Mac-3-positive areas were measured using computer-assisted image analysis software (Image-Pro Plus; Media Cybernetics, Bethesda, MD) and presented as positive area per mm2 of lesion area. Media SMC accumulation was graded according to the grading keys described previously.32 (link)
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