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8 protocols using mannitol

1

Secretoneurin and Alexa Fluor® 647 Labeled Biodistribution

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Secretoneurin (SN) and Alexa Fluor® 647 labeled SN were synthesized and purified by piChem (Graz, Austria) and provided as freeze-dried product. Full length SN sequence was used as reported by Fischer-Colbire et al: TNE IVE EQY TPQ SLA TLE SVF QEL GKL TGP NNQ [30 (link)]. Single stranded DNA oligonucleotides (ODN 1826 control—5’-TCC ATG AGC TTC CTG AGC TT-3’) were obtained from InvivoGen (San Diego, USA) and contain full phosphorothioate backbone. ODN 1826 control does not cause any immunostimulatory effect and was therefore used as non-active ODN component. Protamine free base (Grade IV, Histone free) was purchased from Sigma Aldrich (Vienna, Austria). For our in-vivo biodistribution study oligonucleotides were synthesized by Biospring (Frankfurt am Main, Germany) with the same sequence and backbone properties as mentioned above.
Stock solutions for each component were prepared in Milli-Q (MQ) water and stored at -24°C. MQ water (ultra-pure water) was provided by a Milli-Q-Gradient system (Merck-Millipore, Darmstadt, Germany). In addition, the water was sterilized before usage at 121°C for 20 min.
For HPLC measurements, acetonitrile (HPLC gradient grade) was obtained from VWR (Leuven, Belgium) and trifluoroacetic acid from Merck (Darmstadt, Germany). Mannitol was purchased from Carl Roth (Vienna, Austria) and was used as cryoprotectant for lyophilization.
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2

Microbial Growth Media Preparation

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Activated charcoal, agar agar Kobe I, and mannitol were purchased from Carl Roth (Karlsruhe, Germany). Soy flour (Hensel Bio-Voll-Soja) was from W. Schoenenberger GmBH Co. KG (Magstadt, Germany). HPLC grade methanol was purchased from VWR International GmbH (Bruchsal, Germany). Ethyl acetate was distilled prior to use. For preparation of media, double distilled water was used. All other chemicals were from Sigma-Aldrich (Taufkirchen, Germany). Petri dishes were purchased from Greiner Bio-One GmbH (Frickenhausen, Germany).
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3

Detailed Reagents for Oxidative Stress

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The following chemicals
were used: calcium
chloride (CaCl2·6H2O), Roth #T886; Cu/Zn-SOD
from bovine liver, Sigma #S8409; Cyt c from equine
heart, Sigma #C2506 and BioChemica/Fluka #30400; DMSO, Roth # 4720;
EDTA, Aldrich #E2,628-2; FeEDDHA 138, Duchefa #F0527; ferritin, Sigma
#F4503; ferrous sulfate (FeIISO4·7H2O), Roth #P015 and Merck #3965; ferredoxin from Chlamydomonas
reinhardtii
; ferric nitrate (FeIIINO3·9H2O), Fluka #44949; heminchloride, Roth#7629; Hb
from bovine blood, Sigma #H2500; hydrochloric acid (HCl), Roth #4625;
hydrogen peroxide (H2O2), Roth #8070 and Merck
# 1.08597; luminol, Roth # 4203; mannitol, Roth #4175; peroxidase
from horseradish (HRP), Sigma #P6140; potassium hydroxide (KOH), Roth
#5658; and Tris ultrapure, ICN Biomedicals #77861.
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4

Mitochondrial Bioenergetics and Antioxidant Analysis

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Glutamic acid, succinic acid, adenosine-5′-diphosphate sodium salt (ADP), cytochrome c from bovine heart, malic acid, ethylene glycol-bis-(b-aminoethylether)-N,N,N′N′-tetra acetic acid (EGTA), KH2PO4, TrisHCl, ethylenediamine tetra-acetic acid (EDTA), amytal, carboxyatractyloside (CAT), guanosine triphosphate (GTP)quercetin, acetonitrile, 2,2-azinobis (ethyl-2,3-dihydrobenzothiazoline-6-sulphonic acid) diammonium salt (ABTS), potassium persulfate, iron(III) chloride hexahydrate (FeCl3·6H2O), 2,4,6-tripyridyl-s-triazine (TPTZ), hydrochloric acid, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox) were obtained from “Sigma–Aldrich GmbH”, Steinheim, Germany. Sucrose, mannitol, HEPES, KCl, MgCl2, trifluoroacetic acid, hyperoside, isoquercitrin, rutin were obtained from “Carl Roth Gmbh”, Karlsruhe, Germany.
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5

Vascularization Visualization Protocol

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Four constructs per group per time period were used for immunohistochemical analysis. Vascularization was visualized after intra-aortal perfusion with India ink (Indian Black Ink, LeFranc & Bourgeois, London, UK) as described previously [21 (link)]. Briefly, rats underwent a longitudinal laparotomy. The descending aorta was cannulated and the inferior caval vein was perforated. 150–200 mL of a heated Ringer-Heparin solution (100 IU/mL) were used to flush the aorta until the blood was washed out of the system. 30 mL of India ink (50% v/v) in 5% gelatin (Carl Roth, Karlsruhe, Germany) and 4% mannitol (Carl Roth) was injected into the arterial system. After ligation of the aorta and the inferior caval vein, the specimens were placed at −20 °C for 1–2 h. Afterwards, the constructs including the scaffolds and the EPI loop were taken out of the isolation chambers, weighed and then placed in 4% formalin (Carl Roth) over night for paraffin embedding.
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6

Antioxidant Enzyme Assay Protocol

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Ascorbate
(Sigma, #A7506), benzidine (Sigma
#31614), calcium chloride (CaCl2·6H2O;
Roth #T886), coumaric acid (Sigma #C9008), Cu/Zn-superoxide dismutase
from bovine liver (Sigma #S8409), cytochrome c from
equine heart (Sigma #C2506 and BioChemica/Fluka #30400), DMSO (Roth
#4720), dithiothreitol (Roth#6908), ethylenediaminetetraacetic acid
(Aldrich #E2,628-2), FeEDDHA (Duchefa #F0527), ferrous sulfate (FeIISO4·7H2O; Roth #P015 and Merck
#3965), ferric nitrate (FeIIINO3·9H2O; Fluka #44949), GSH (Roth #6382), heminchlorid (Roth #7629),
hemoglobin from bovine blood (Sigma #H2500), hydrochloric acid (HCl
34%; Roth #4625), hydrogen peroxide (H2O2 30%;
Roth #8070 and Merck #1.08597), IP (Fluka #58020), luminol (Roth #4203),
mannitol (Roth #4175), NADH (Roth #AE12), HRP (Sigma #P6140), potassium
hydroxide (KOH; Roth #5658), sodium sulfite (Na2SO3; Fluka #71988), TRIS ultrapure (ICN Biomedicals #77861),
trolox (KJ Ross-Petersen Aps; Denmark and Aldrich #23881), and uric
acid (UA, Sigma #U2625).
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7

Mitochondrial Respiration Assay

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Succinic acid, glutamic acid, cytochrome c from bovine heart, adenosine-5'-diphosphate sodium salt (ADP), CAPE, malic acid, KH2PO4, ethylene glycol-bis-(b-aminoethylether)-N,N,N',N'-tetraacetic acid (EGTA), ethylenediamine tetraacetic acid (EDTA), Tris, amytal, and atractyloside were obtained from “Sigma.” Mannitol, sucrose, KCl, HEPES, and MgCl2 were obtained from “Roth.”
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8

Ibrutinib and Acalabrutinib Dilution

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Ibrutinib and acalabrutinib (MedChemExpress) were diluted to 30 mg/kg BW or 3 mg/kg BW in vehicle, respectively. The vehicle was composed of 5% mannitol (Carl Roth), 0.5% gelantine (Sigma Aldrich) and 2.5% dimethyl sulfoxide (DMSO; Carl Roth) dissolved in injection-grade water (Fresenius Kabi).
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