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10 protocols using d tagatose

1

Enzymatic Conversion of D-Galactose to D-Tagatose

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Example 11

The recombinant protein having isomerase activity prepared from E. coli was immobilized by using techniques known in the prior art or directly contacted with D-galactose solution for production of D-tagatose. The bioconversion conditions comprise maintaining the D-galactose substrate concentration between 20% and 95% (w/v) and 100 to 1000 units of the recombinant isomerase. For the present embodiment, the substrate was taken at a concentration of 100 g/L and 100 Units of immobilized enzyme was used. Bioconversion reaction was carried out in 20 mM Tris-HCl buffer containing 5 mM MnCl2 at pH 8.0 at temperature between 60° C. The conversion of D-allulose to D-allose reached saturation at higher substrate concentration, preferably between 40% to 50% (w/v) at enzyme concentration between 400 to 600, preferably 500 units of enzyme with reaction time of about 6 h.

The reaction mixture was subjected to HPLC analysis to confirm the residual substrate and product formation. The product peak was confirmed with commercially available D-galactose and D-tagatose (Sigma Aldrich) as substrate and product standards, respectively. The results of the studies are depicted in FIGS. 9A-9C. FIG. 9A depicts D-galactose standard chromatogram, FIG. 9B depicts D-tagatose standard chromatogram and FIG. 9C depicts D-galactose and D-tagatose bioconversion mixture chromatogram.

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2

Exploring Chemical Synthesis and Modification

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d-Tagatose, d-galactose, l-arabinose, l-cysteine, epichlorohydrin, iminodiacetic acid (IDA), sodium periodate (NaIO4), isopropyl-1-thio-β-d-galactopyranoside (IPTG), ampicillin, kanamycin, carbazole crystalline, and agarose CL-4B were purchased from Sigma (Sigma-Aldrich, St. Louis, MO, USA). In addition, different analytical grade reagents from different trademarks were used.
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3

Enzymatic Characterization of β-Galactosidase

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The enzyme β-galactosidase from B. circulans (Biolacta N-5) was kindly provided by Daiwa Kasei (Osaka, Japan), d-xylose (d-glucose) isomerase was purchased from Hampton Research (Aliso Viejo, CA, USA). Eupergit C and Eupergit C 250 L were a gift from Röhm Pharma (Darmstadt, Germany). O-Nitrophenyl-β-d-galactopyranoside (ONPG), α-lactose, d-galactose, d-tagatose, d-glucose, d-fructose, l-cysteine hydrochloride, and carbazole were purchased from Sigma (St. Louis, MO, USA); bicinchoninic acid (BCA reagent) was from Pierce (Rockford, IL, USA); and all other chemicals were of analytical or HPLC grade. The enzymatic kit for glucose determination was from Spinreact S.A. (Girona, Spain). Cheese wheys were kindly supplied by CONAPROLE (Cooperativa Nacional de Productores de Leche, Uruguay).
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4

Enzymatic Production of Rare Sugars

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The d-fructose, d-allulose, d-sorbose and d-tagatose were purchased from Sigma-Aldrich (St Louis, MO). All other reagents were of analytical grade and obtained from Aladdin (Shanghai, China). The wild-type genes of MvTA and GutB1 were synthesized by GENEWIZ (Suzhou, China).
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5

Recombinant IgG1 Production in CHO Cells

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Ammonium chloride, castanospermine, cytidine (Cyt), 1‐deoxymannojirimycin hydrochloride (deoxymannojirimycin), deoxynojirimycin hydrochloride (deoxynojirimycin), dexamethasone, fetuin from fetal bovine serum, L‐fucose (Fuc), D‐(+)‐mannose (Man), monensin sodium salt (Monensin), mycophenolic acid (MPA), N‐acetyl‐d‐mannosamine (ManNAc), D‐(+)‐raffinose pentahydrate (Raffinose), reactive Red 120, sucrose, d‐tagatose, uridine were purchased from Sigma Aldrich (St. Louis, MO). 2‐Acetamido‐1,3,4,6‐tetra‐O‐acetyl‐2‐deoxy‐ß‐D‐mannopyranose (AC4ManNAc) and tetraacetylated N‐azidoacetylmannosamine (ManNaz) were purchased from Carbosynth (Compton, UK), mannostatin A HCl from Santa Cruz (Dallas, TX) and copper(II) chloride dihydrate (CuCl2), dimethyl sulfoxide (DMSO), 96% ethanol, D‐(+)‐galactose (Gal), glycerol, manganese(II) chloride (Mn), N‐acetyl‐2,3‐dehydro‐2‐deoxyneuraminic acid (DANA) and 2‐F‐peracetyl fucose (2F‐PerAcFuc) were purchased from Merck (Darmstadt, Germany).
CHO K1 and CHO DG44 cell lines producing two different recombinant IgG1 were used in this study.
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6

Profiling Carbohydrate Fermentation Capabilities

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Initial screening of carbohydrate fermentation was performed using the commercial API50® kit (Biomerieux, Basingstoke, UK) following the manufacturer’s instructions. Additionally, growth measurements in the presence of twelve selected carbohydrates (D-tagatose, L-sorbose, myo-inositol, D-lactose, D-saccharose, D-maltose, D-lyxose, pullulan, starch (all products of SigmaAldrich), amygdaline, inulin, L-arabitol (all products of AlphaAesar, Ward Hill, MA, USA) for each of the strains were performed by monitoring OD600nm using a Synergy HT plate reader (BioTek Instruments, Winsooski, VT, USA). Carbohydrate solutions were prepared by the addition of the carbohydrate of interest (1 % w/v) to the MMRS followed by filter sterilisation (0.45 μm filter, Sarstedt, Wexford, Ireland). 500 μL of supplemented MMRS was inoculated with 1 % (v/v) of a bacterial culture grown in MRS at 30°C. The inoculated samples were grown at 30°C and OD600nm readings were taken after 48 h, by placing 200 μL of a culture in 96 well plate. Each assay was performed in triplicate for each of the strains. Significance of differences in growth was tested by One-way Analysis of Variance (ANOVA), followed by Least Significant Test (LSD), performed in R statistical software (https://www.r-project.org/).
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7

Leukemia Cell Line Proliferation Assay

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MV4‐11, MOLM‐13, MOLM14, THP‐1, U937, K562, and NB4 cells were cultured in RPMI1640 supplemented with 10% FCS. MV4‐11 was purchased from ATCC (Manassas, VA) THP‐1, U937, and K562 were purchased from JCRB Cell Bank (Japanese Collection of Research Bioresources Cell Bank). MOLM13 and MOLM14 were kind gifts from Dr. Yusuke Furukawa (Jichi Medical University, Japan). Detailed information about these cell lines has been published previously.14, 15 Proliferation of leukemia cells was measured using a Cell Counting Kit‐8 (Dojindo Molecular Technologies).
Control CD34+ cells were purchased from STEMCELL Technologies. Reagents used in the study included the Carbohydrate Kit, d‐(−)‐tagatose, d‐sorbitol, xylitol, d‐mannose 6‐phosphate sodium salt (Sigma‐Aldrich), anti‐AMPKα antibody (2532), and anti‐phospho‐AMPKα (Thr172) antibody (2535) (Cell Signaling Technologies).
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8

Cloning and Expression of L-AI from Clostridium hylemonae

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C. hylemonae (DSM 15053) was employed as a source of l-AI. E. coli JM 109 [F´ traD36 proA+B+lacIqΔ(lacZ)M15/Δ(lac-proAB) glnV44 e14-gyrA96 recA1 relA1 endA1 thi hsdR17] (Promega, Madison, WI, USA) was applied as a host cell for gene cloning and DNA manipulation. E. coli BL21 (DE3) strain [F-ompT hsdSB (rB-mB+) gal dcm (DE3)] (Novogen, Darmstadt, Germany) was applied as a host cell for expressing the enzyme. pGEM-T (Promega) and pET-28a(+) (Novogen, Darmstadt, Germany) vectors were employed as cloning and expression vectors, respectively. T4 DNA ligase was purchased from Elpis Biotech, Inc. (Daejeon, Korea). d-Tagatose and d-galactose of the highest purity were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). All other chemicals used in this study were of reagent grade.
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9

Quantification and Characterization of Sugars

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The glucose and the total ketohexose contents in the samples were measured by Trinder’s assay and the cysteine-carbazole-sulfuric acid method, respectively [45 (link),46 (link)].
Analysis and characterization of sugars by HPLC was performed in a Waters-Millipore apparatus (Waters-Millipore Corp., Burlington, NC, USA) equipped with a carbohydrate analysis column (Rezex RCM, Phenomenex, Torrance, CA, USA) and a RI-detector, at 80 °C and a flow rate of 0.6 mL/min, employing distilled water as mobile phase and lactose, d-glucose, d-galactose, d-tagatose, and d-fructose as standards (Sigma Chem. Co., St. Louis, MO, USA).
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10

Molecular cloning and characterization of recombinant proteins

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If not stated otherwise all chemicals were purchased from Sigma Aldrich (Buchs, Switzerland). NADH was purchased from GERBU (Heidelberg, Germany), D-fructose, D-sorbose and L-fructose were purchased from Carbosynth (Berkshire, UK), D-tagatose and L-sorbose were obtained from Sigma Aldrich (Buchs, Switzerland). D-psicose was produced inhouse by epimerization of D-fructose to D-psicose with D-tagatose epimerase and separation of D-psicose from D-fructose by continuous chromatography [26] . Restriction enzymes and polymerases were obtained from New England Biolabs (Ipswich, MA, USA) and oligonucleotides from Microsynth (Balgach, Switzerland).
Molecular Biology: General molecular biology was performed according to standard protocols [27] . All PCRs were generated using Phusion High-Fidelity Polymerase (NEB). Primers used for cloning are listed in Table S1 and all plasmids used and generated in this work are listed in Table S2. All general cloning work was done in E. coli Top10 cells (Invitrogen).
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