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80 protocols using columbia agar

1

Hemolytic and Protease Activities of A. baumannii

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To assess the potential hemolytic activities of the different A. baumannii isolates, we spotted 5 μL of an overnight (O/N) culture of bacteria previously grown in LB medium for 16 h at 37°C under constant agitation (175 rpm) on 4 different blood agar plates: (i) Columbia agar with 5% horse blood, (ii) Columbia agar with 5% sheep blood, (iii) Trypticase soy agar II with 5% horse blood, and (iv) Trypticase soy agar II with 5% sheep blood, all purchased from BD (Becton, Dickinson and Company, Franklin Lakes, NJ). To test for secreted protease activity, we used the same approaches as described above and spotted the 5 μL of bacteria on LB agar plates containing 2% skim milk powder for microbiology (Sigma-Aldrich/Merck KGaA, Darmstadt, Germany). Plates were incubated at 25°C and monitored for hemolytic and protease activities after 1, 2, and 6 days of incubation.
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2

Assessing Hemolytic and Protease Activities of A. baumannii

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To assess the potential hemolytic activities of the different A. baumannii isolates, we spotted 5 µl of an O/N (overnight) culture of bacteria previously grown in LB medium for 16 hours at 37°C under constant agitation (175 rpm) on 4 different Blood Agar Plates: (i) Columbia Agar with 5% Horse Blood, (ii) Columbia Agar with 5% Sheep Blood, (iii) Trypticase TM Soy Agar II with 5% Horse Blood and (iv) Trypticase TM Soy Agar II with 5% Sheep blood, all purchased from BD (Becton, Dickinson and Company, Franklin Lakes, NJ). To test for secreted protease activity, we used the same approaches as described above and spotted the 5 µl of bacteria on LB agar plates containing 2% of Skim Milk Powder for microbiology (Sigma-Aldrich/Merck KGaA, Darmstadt, Germany). Plates were incubated at 25°C and monitored for hemolytic and protease activities after 1, 2 and 6 days of incubation.
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3

Quantitative Microbiological Analysis of Wound Tissue

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Specimens of wound tissue were homogenized in 0.5 mL volumes of sterile phosphate buffered saline (PBS, Sigma Aldrich, St Louis, MO). After mechanical homogenization, the specimens were seeded in Columbia agar (BD, Sparks, MD), MacConkey agar (BD), Sabouraud dextrose agar (BD) and Columbia agar supplemented with nalidixic acid and colistin (BD) using a spiral plater workstation (Don Whitley Scientific, Shipley, UK). Quantitative and qualitative microbiological analyses were performed after incubation of plates at 37 °C for 24 h. Isolated microorganisms were identified by standard methods and susceptibility testing was performed in accordance with Clinical and Laboratory Standards by the disk diffusion method [24 ]. The results were expressed as CFU per gram of tissue (CFU/g) and the limit of detection was 10 colony-forming units (CFU).
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4

Bacterial Isolation from Milk Samples

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Milk samples (10 µL) were plated on BD Columbia agar with 5% sheep blood (Becton-Dickinson, Franklin Lakes, NJ, USA) and MacConkey-3 agar (Oxoid, Basingstoke, Hampshire, UK) and incubated at 37°C for 24–48 hours. Strain identification was performed by matrix-assisted laser desorption/ionization time-of-flight mass spectroscopy (MALDI-TOF MS).
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5

Hemolysis Testing on Blood Agar

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The hemolysis testing was conducted on BD™ Columbia agar with 5% sheep blood (Becton Dickinson GmbH, Germany) to determine the type of hemolysis. VN2, VN3, VN5, and VN7 were cultured in BD™ Columbia agar with 5% sheep blood agar and incubated at 37°C for 24 hr for the determination of the hemolysis pattern. Streptococcus pneumoniae, Streptococcus pyogenes, and Staphylococcus epidermidis were used as the positive control of α-hemolysis, β-hemolysis, and γ-hemolysis, respectively.
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6

Bacterial Growth Evaluation on Kirschner Wires

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The Kirschner wires were explanted, rolled over nutrient agar (BD™ Columbia Agar, Becton Dickinson, Heidelberg, Germany), and placed in 2.5 ml sterile TSB. Agar plates and TSB were incubated at 37.8 °C. After 24 h, CFU on agar plates were counted and bacterial growth in the tryptic soy solution was evaluated (cloudy: positive growth; clear: no growth) [12 (link)].
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7

Staphylococcus aureus Identification Protocol

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Microbiological samples were taken during the second surgery and after the animals were sacrificed. 10 μl of swabs and clinical samples were cultured on BD Columbia Agar with 5% Sheep Blood (Becton Dickinson, Heidelberg, Germany) at 37 °C with 5% CO2 for 24 h. Colonies with morphological consistency with S. aureus were confirmed by a slide agglutination test (Pastorex Staph Plus, Bio-rad, Germany), as described elsewhere [18 (link)]. Strain typing was performed by Sanger sequencing and comparison of the polymorphic protein A gene (spa typing) as previously described [18 (link)].
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8

Antimicrobial Evaluation of HA Nanocrystals

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Bacterial strains. The in vitro effect of the HA nanocrystals loaded with the monocyclic azetidinones was evaluated against Gram-positive and Gram-negative reference bacterial strains: Staphylococcus aureus (ATCC 25923), Escherichia coli (ATCC 25922). In addition, clinical isolates obtained from surgical bone biopsies were included in the study and they were categorized based on their antimicrobial susceptibility to methicillin. The tested strains were isolated on BD Columbia Agar with 5% sheep blood (Becton Dickinson, Germany) and confirmed by MALDI-TOF MS (Bruker Daltonik, Germany)44 (link). Their susceptibility was analyzed by the Vitek2 semi-automated system (bioMerieux, France) and interpreted following EUCAST guidelines. MRSA strains were confirmed by growth on BD oxacillin screen agar (Becton Dickinson, Germany), as in the clinical microbiology laboratory resistance to oxacillin is the marker for detecting methicillin resistance45 (link). SCV phenotypic characterization was carried out by identification of very small pinpoint colonies on blood agar plate following 48 h of growth.
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9

Colistin-Resistant Bacterial Isolation

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Throat and rectal swabs were plated on BD Columbia Agar with 5 % sheep blood (Becton-Dickinson) with a 10 µg colistin disk (Oxoid) placed in the first streak and plates were incubated at 37°C under a 5% CO2 atmosphere for 48 hours. Strain identification was performed by MALDI-TOF from all phenotypically different colonies in the colistin disk’s inhibition zone.
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10

Identifying Hypermucoviscous Klebsiella

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The string test was performed to identify the hypermucoviscous (HMV) phenotype. The strains were grown in BD Columbia agar with 5% sheep blood (Beckton Dickinson) at 37°C overnight. Afterwards, a bacteriological inoculation loop was used to stretch a mucous bacterial colony. The HMV phenotype was positive when a string > 5 mm in length was observed (Fang et al., 2004 (link)).
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