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Ecz 500 nmr spectrometer

Manufactured by JEOL

The ECZ 500 NMR spectrometer is a nuclear magnetic resonance (NMR) instrument manufactured by JEOL. It is designed to perform high-resolution NMR analysis. The core function of the ECZ 500 NMR spectrometer is to detect and analyze the magnetic properties of atomic nuclei in samples, providing information about the structure and composition of the analyzed materials.

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4 protocols using ecz 500 nmr spectrometer

1

Analytical Techniques for Chemical Characterization

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Optical rotations were measured on a JASCO P-2000 polarimeter, UV/Vis data were obtained using a Beckman DU800 spectrophotometer, and IR spectra were recorded on a Nicolet 100 FT-IR spectrometer. NMR data were obtained on a JEOL ECZ 500 NMR spectrometer equipped with a 3 mm inverse probe (H3X), the 1,1-ADEQUATE experiment was performed on a Bruker AVANCE III 600 MHz NMR with a 1.7 mm dual tune TCI cryoprobe. NMR data were recorded in either DMSO-d6 or methanol-d4 and adjusted to the residual solvent peak (DMSO-d6 δH 2.50, δC 39.52; methanol-d4 δH 3.31, δC 49.00). For HPLC-MS analysis, a Thermo Finnigan Surveyor HPLC system with a Phenomenex Kinetex 5 μm C18 100 × 4.6 mm column coupled to a Thermo-Finnigan LCQ Advantage Max Mass Spectrometer was used. Samples were analyzed using a linear gradient with (A) H2O + 0.1% FA to (B) CH3CN + 0.1% FA at a flow rate of 0.6 ml/min and UV detection at 220 nm, 254 nm and 280 nm. For HR-ESI-MS analysis, an Agilent 6530 Accurate Mass QTOF mass spectrometer was used in the positive ion mode. Semi-preparative HPLC was performed on a Thermo Fisher Scientific HPLC system with a Thermo Dionex UltiMate 3000 pump, RS autosampler, RS diode array detector, and automated fraction collector. All solvents were HPLC grade except for H2O, which was purified by a Millipore Milli-Q system before use.
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2

Characterization of Novel Synthetic Compounds

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All starting materials were purchased from Sigma-Aldrich. Other synthetic reagents and solvents were purchased from Fischer Scientific. All solvents employed in synthesis were dried by distilling from CaH2 immediately prior to use. LCMS analyses were carried out on a Thermo Finnigan Surveyor Autosampler-Plus/LC-Pump-Plus/PDA-Plus system and a Finnigan LCQ Advantage Plus mass spectrometer, with samples dissolved at 1 mg/ml in MeOH. Reversed-phase HPLC was performed on a Kinetex C18 semipreparative column (100 × 4.6 mm × 5 μm, Phenomenex) using a Thermo Fisher Scientific HPLC system comprising a Thermo Dionex UltiMate 3000 pump, RS autosampler, RS diode array detector, and automated fraction collector. 1D NMR and 2D NMR spectra were acquired using a Bruker Avance III DRX-600 NMR and a JEOL ECZ 500 NMR spectrometer. Deuterated solvents for NMR were purchased from Cambridge Isotope Laboratories, Inc. Samples were passed through C18 SPE (5,000 mg/20 ml, SEClute) before LC injections. All other general solvents were HPLC grade as purchased from Thermo Fisher Scientific.
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3

NMR Spectroscopic Analysis of Chemical Samples

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Deuterated NMR solvents were purchased from Cambridge Isotope Laboratories. 1H NMR and 2D NMR spectra were collected on a Bruker Avance III DRX-600 NMR with a 1.7 mm dual-tune TCI cryoprobe (600 and 150 MHz for 1H and 13 C NMR, respectively) and a JEOL ECZ 500 NMR spectrometer equipped with a 3 mm inverse detection probe. NMR spectra were referenced to residual solvent DMSO signals (δH 2.50 and δC 39.5 as internal standards). The NMR spectra were processed using MestReNova (Mnova 12.0, Mestrelab Research) or TopSpin 3.0 (Bruker Biospin) software.
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4

Spectral Analysis of Cryptomaldamide

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Chemical reagents were purchased from Acros, Fluka, Sigma-Aldrich, or TCI. Deuterated NMR solvents were purchased from Cambridge Isotope Laboratories. 1H NMR spectra were collected on a JEOL ECZ 500 NMR spectrometer equipped with a 3 mm inverse detection probe. NMR spectra were referenced to residual solvent DMSO signals (δ H 2.50 ppm and δ C 39.52 ppm as internal standards). The NMR spectra were processed using MestReNova (Mnova 12.0, Mestrelab Research). Each crude and pure sample was injected and analyzed via LC-MS/MS on a Thermo Finnigan Surveyor Autosampler-Plus/LC-MS/MS/PDA-Plus system coupled to a Thermo Finnigan LCQ Advantage Max mass spectrometer with a 10 minute gradient of 30 – 100% CH3CN in water with 0.1% formic acid in positive mode (Kinetex 5μ C18 100Å, 100 x 4.60 mm, 0.6 mL/min). The ion trap mass spectrometry raw data (.RAW) were converted to the m/z extensible markup language (.mzXML) with MSConvert (v 3.0.19) and uploaded to GNPS.84 (link) Spectral library search was performed against available public libraries and NIST17. The spectra for cryptomaldamide were annotated in the GNPS spectral library (https://gnps.ucsd.edu/) (accession number: CCMSLIB00005724004).
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