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5 protocols using non specific control sirna

1

Endothelial Cell Signaling Pathway Regulation

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Recombinant human TNF-α was purchased from R&D Systems (Wiesbaden-Norderstedt, Germany). Anti-PAR-1 (ATAP2), anti-NQO1, anti-eNOS, and anti-VCAM-1 were from Santa Cruz Biotechnology (Santa Cruz, CA, USA), and anti-phospho-HDAC5, anti-HDAC5, anti-phospho-ERK5, anti-ERK5, anti-phospho-AKT, anti-AKT, anti-phospho-AMPK, anti-AMPK, anti-phospho-eNOS, anti-EEA1, anti-phospho-Src, anti-phospho-FAK, anti-phospho-Erk1/2, anti-Erk1/2 and anti-VE-cadherin were from Cell Signaling Technology (Danvers, MA, USA). Anti-COX-2 was from Cayman Chemical Company (Ann Arvor, MI, USA). Anti-tubulin was from Sigma–Aldrich (St. Louis, MO, USA). Phenylephrine, Acetylcholine and U46619 were purchased from Sigma–Aldrich (St. Louis, MO, USA). Pertussis toxin (PTX) was purchased from Gibco. Small interfering RNA against human PAR-1 was purchased from Santa Cruz Biotechnology (sc-36663, Santa Cruz, CA, USA). For PAR-1 silencing, HUVECs were transiently transfected with 100 pmol/L of control RNA or siRNA targeting human PAR-1 using Lipofectamine 2000 reagent (#11668-019, Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. A non-specific control siRNA from Bioneer was used as a negative control. HUVECs were harvested 48–72 hours after siRNA transfection, protein expressions were assessed by immunoblotting with antibodies and mRNA levels by quantitative real time RT-PCR (RT-qPCR).
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2

Nrf2 and ERK5 Knockdown in VSMCs

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VSMCs were transiently transfected with 50 or 100 pM of control or specific siRNAs against Nrf2 or ERK5 using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s instructions. The targeting sequences of siRNAs were as follows: rat Nrf2 siRNA (5’-CAAACAGAAUGGACCUAAAdTdT-3’); rat/mouse ERK5 siRNA(5’-GAAAGGGTGCGAGCCTATAUU-3’). Non-specific control siRNA was purchased from Bioneer and used as a negative control. Cells were harvested 48–72 h after siRNA transfection, and mRNA expression levels were measured.
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3

Silencing ERK5 and CHOP Transcripts

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Cells were transiently transfected with control siRNA or siRNA against ERK5 or CHOP using Lipofectamine 2000 (Invitrogen, USA), according to the manufacturer’s instructions. Rat ERK5 siRNA and rat CHOP siRNA were purchased from Bioneer (Korea). The targeting sequences of the siRNAs were as follows: rat CHOP siRNA, sense, 5′-CUGGGAAACA GCGCAUGAA-3′; antisense, 5′-UUCAUGCGCUGUUUCCCAG-3′ (He et al., 2012 (link)) and rat ERK5 siRNA, 5′-GAAAGGGTGC GAGCCTATAUU-3′ and human ERK5 siRNA, 5′-GGGCCTAT ATCCAGAGCUU-3′35. Non-specific control siRNA (Bioneer) was used as a negative control. The constitutively active form of MEK5α (CA-MEK5α) was cloned as previously described (Le et al., 2013 (link)).
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4

Silencing ChREBP and ERK5 in INS-1 cells

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INS-1 cells were transiently transfected with 100 pM of control siRNA or siRNA against ChREBP (siChREBP) using Lipofectamine® RNAiMAX (Invitrogen), according to the manufacturer’s instructions. ERK5 siRNAs were purchased from Bioneer (Daejeon, Korea). The targeting sequences of siRNA are as follows: mouse ERK5 siRNA, 5′-UACCCUUCCUGCACCCACAACCUUU-3′ [25 (link)]. Non-specific control siRNA was purchased from Bioneer and used as a negative control. Cells were harvested 48 h after siRNA transfection, and the protein expression of ChREBP were assessed by immunoblotting with specific antibodies.
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5

CHIP and TXNIP Silencing in Cells

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For CHIP or TXNIP silencing, cells were transiently transfected with control small interfering (siRNA) or siRNA against CHIP or TXNIP using Lipofectamine 2000 (Invitrogen) according to the manufacturer’s instructions. Mouse CHIP siRNA and non-specific control siRNA were purchased from Bioneer (Daejeon, Republic of Korea). TXNIP siRNAs (sc-44944 for mouse, sc-44943 for human) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The mouse and rat specific CHIP target sequence was 5´-GGGAUGAUAUUCCUAGUGC-3´. non-specific control siRNA was used as the negative control. The cells were harvested 48 to 72 h after siRNA transfection, and protein expression was determined by immunoblotting with specific antibodies.
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