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6 protocols using mitofusin 1

1

Hippocampal Immunoblot Sample Preparation

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To acquire specimens for immunoblot, the mice were perfused with cold PBS and one side of the hippocampus was dissected immediately (Wang et al., 2021b (link)). Hippocampal tissue was homogenized at 4°C in RIPA buffer (containing protease and phosphatase inhibitors) and followed by sonication (10 s × three times with a 10-s interval). Ten micrograms of protein was loaded for immunoblot as previously described (Wang et al., 2021b (link)). GAPDH was used as a loading control for total lysate immunoblots. Primary antibodies used were as follows: p-DRP(Ser616) (Thermo Fisher; #PA5-64821, 1:500), DRP1 (Cell Signaling, #8570, AB_10950498, 1:1000), mitofusin-1 (Abcam, #104274, 1:500), mitofusin-2 (Cell Signaling, #9482, AB_2716838, 1:1000), p-MFF (Ser146) (Cell Signaling, #49281, 1:1000), MFF (Cell Signaling, #84580, AB_2728769, 1:1000), Tom20 (Cell Signaling, #42406, AB_2687663, 1:1000), VDAC1 (Santa Cruz, #sc-390996, 1:50), OXPHOS (Abcam, #ab110413, AB_2629281, 1:2000), and GAPDH (Cell Signaling #2118s; AB_561053, 1:1,000) overnight at 4°C followed by incubation with an IR-dye-labeled secondary antibody for 1 hour and measured with LiCor Odyssey followed by densitometric analysis.
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2

Lung and MLEC Protein Analyses

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Lung or MLEC protein analyses were performed as previously described (7 (link)) using LC3B, p62, Caspase3, autophagocytosis-associated protein 3 (ATG3), ATG7, Beclin-1 (Cell Signaling Technology), PINK1 (Millipore, clone N4/15), LAMP2A, mitofusin-1 (MFN1), MFN2, optic atrophy type 1 (OPA1), dynamin-related protein 1 (DRP1) (Abcam), Proteasome 20S α6 subunit (Enzo Life Sci), PARIS (Millipore, clone N196/16), Caspase 1, IL-1β, Parkin, PGC-1α and β-actin (Santa Cruz Biotechnology) antibodies.
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3

Mitochondrial Dynamics Regulation Assay

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High glucose Dulbecco’s modified Eagle’s medium (DMEM) and heat-inactivated fetal bovine serum (FBS) were from GIBCO (Grant Island, NY, USA). Trypsin, uridine, penicillin, streptomycin and Tween-20 were from Sigma Aldrich (St. Louis, MO, USA).
All other chemicals were of analytical grade
The anti-Drp1(Western Blotting (WB): 1:2500) and anti-Opa1 (WB: 1:2500) were obtained from BD Transduction Laboratories (San Diego, CA, USA), Mitofusin 1 (WB 1:2500) was from Abcam (Cambridge, UK), Mitofusin 2 (WB 1:2500), β-actin (WB: 1:50 000) and Fis1 (WB 1:1000) from Sigma Aldrich (St. Luis, MO, USA). Alexa Fluor 488 Phalloidin and DAPI were purchased from Invitrogen (Eugene, OR, USA).
Secondary antibodies labelled with horseradish peroxidase (WB: 1:5000) were from Santa Cruz Biotechnology (Santa Cruz, CA, USA), and antibody used for immunofluorescence staining was purchased from Jackson ImmunoResearch Europe, Ltd. (Newmarket, UK) and Invitrogen (Eugene, OR, USA). IRDye 680 and IRDye 800 Secondary Antibodies (1:5000) were from Li-Cor Biosciences (Bad Homburg, Germany).
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4

Mitochondrial Dynamics Protein Analysis

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Total proteins were extracted with cell lysis buffer (Sigma-Aldrich Inc.) in the presence of protease inhibitors (Halt™ Protease Inhibitor Cocktail (100×) and EDTA (100×), ThermoFisher Scientific) and quantified according to the BCA method (Pierce). Equal amounts (~3.8 µg) of protein/sample were separated on 4–20% gradient SDS-polyacrylamide gels (Bio-Rad Laboratories). Proteins were transferred to PVDF membranes (Bio-Rad Laboratories) and blocked with 5% bovine serum albumin (BSA) in PBS+ 0.05% Tween 20. Western blots were performed with mouse or rabbit antibodies for mitofusin-1 (1/2000, Abcam), mitofusin-2 (0.5 µg/ml, Abcam), DRP1 (1:500, Novus Biologicals), OPA1 (1:1000, Novus Biologicals), ATPB for the β subunit of the ATP synthase (0.5 µg/ml, Abcam) and VDAC1 (1 µg/ml, Abcam). To assure equal amount of loading, GAPDH (1 µg/ml, Abcam) was used as loading controls. Secondary antibodies were applied for 1 h and quantitative densitometry was performed after chemiluminescence detection using SuperSignal West Pico chemiluminescence substrate (Pierce) and corrections were made for background and loading control.
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5

Western Blotting Analysis of Mitochondrial Proteins

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Cell lysates prepared with NuPAGETM LDS sample buffer (4X) (Invitrogen) were electrophoresed on NuPAGE 4–12% Bis-Tris Gel (Life Technologies), and proteins were electrotransferred to polyvinylidene difluoride (PVDF) membranes with Trans-Blot Turbo PVDF Transfer kit (Bio-Rad). PVDF membranes were blocked with 10% skim milk (Sigma-Aldrich) in TBS, followed by incubation with indicated primary and secondary antibodies (GE healthcare). The specific proteins were detected with the Pierce ECL Western Blotting Substrate (Thermo Scientific). ImageJ was used for quantifications of bands on Western blots.
In this study, the following mouse monoclonal primary antibodies (mAbs) were used: V5-tag (#46-0705) (Invitrogen); OPA1 (#612607), Drp1 (#611113), and Myc-tag (#551101) (BD Biosciences); GAPDH (#sc-32233) (Santa Cruz); and Mitofusin 1 (#ab57602) (Abcam). Rabbit polyclonal antibodies (pAbs) were MIEF2 (#HPA042334), Fis1 (#HPA017430) (Atlas Antibodies); MIEF1 [25 (link)]; Mitofusin 2 (#9482S), PARP (#9542) (Cell Signaling); and VDAC1 (#ab15895) (Abcam). The following secondary antibodies were used: The peroxidase-conjugated anti-mouse and anti-rabbit IgG antibodies (GE Healthcare) for immunoblotting and the DyLight 488- and 649-conjugated anti-mouse and anti-rabbit IgG antibodies (Vector Laboratories) for immunofluorescence.
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6

Western Blot Analysis of Kidney Injury Markers

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Kidney tissue and cells were lysed in an ice-cold lysis buffer (PRO-PREP™ Protein Extraction solution, INTRON, Seongnam-si, Korea). Proteins were separated with 10% PAGE and electroblotted onto a PVDF membrane (BIO-RAD, Seoul, Korea). The membrane was incubated with primary antibody raised against NLRP3 (NOVUS, Centennial, CO, USA), KIM-1 (Abcam, Cambridge, MA, USA), NGAL (Abcam, Cambridge, MA, USA), ACSL4 (Santa cruz, Dallas, TX, USA), GPX4 (Abcam, Cambridge, MA, USA), Cleaved caspase-3 (Cell signaling, Danvers, MA, USA), PARP (Cell sinaling, Danvers, MA, USA), dynamin-1-like protein (DRP1) (Abcam, Cambridge, MA, USA), Mitofusin1 (Abcam, Cambridge, MA, USA), β-actin (Santa cruz, Dallas, TX, USA), GAPDH (Cell Signaling, Danvers, MA, USA) (1:1000) and, subsequently, with horseradish peroxidase-conjugated goat anti-rabbit or mouse immunoglobulin G (1:10,000, BETHYL). The immunoreactive bands were detected by chemiluminescence (ECL, Advansta, CA, USA). β-actin and GAPDH were used as internal controls of cells and tissues.
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