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4 protocols using cd40l

1

IL-6 Expression in CpG-B and CD40L Stimulated PBMCs

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PBMCs were cultured at a concentration of 2×106 cells/ml in RPMI-1640 containing L-glutamine, 10% FCS and antibiotics in medium only or stimulated with 10 μg/ml CpG-B (InvivoGen, California, USA) and 1 μg/ml CD40L (InvivoGen) for 48 h. For the last 5 hours of the culture, an additional stimulation with 50 ng/ml PMA and 1 μg/ml Inomycin (Sigma-Aldrich, MO, USA) in the presence of Golgistop used at 1:1000 dilution (BD) was performed. Cells were first stained for cell surface markers PerCp anti-CD19, FITC anti-CD10 and V450 anti-CD27 in addition to LIVE/DEAD staining. In next step cells were fixed and permeabilized using BD Cytofix/Cytoperm kit and stained with PE anti-IL-6 (MQ2-6A3) and matching isotype control, both from (BD). Cells were washed and fixed in 1% formaldehyde before the analysis were conducted using a Cyan flow cytometer. Collected data were analysed using FlowJo, version 9.4.11 (Tree star).
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2

Purification and Stimulation of Plasmacytoid Dendritic Cells

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Prior to cell culture, pDCs were purified by sorting to be free of tDCs (AXL), following the gating strategy in Figure S3A. 10,000 sorted bona fide pDCs were cultured in 200 μL R10 complete media consisting of RPMI (Corning) with 10% FBS, 2 mM L-glutamine (Corning), 100 IU Penicillin, 100 mg/mL Streptomycin (Corning), 25 mM HEPES (Corning), 1 mM Sodium Pyruvate (Corning), 100 mM MEM Nonessential Amino Acids (Corning) and 55 mM 2-Mercaptoethanol (GIBCO) in 96 well U-bottom plates at 37°C. All conditions included 10 ng/mL recombinant human IL-3 (R&D Systems; carrier-free) for pDC survival. Stimulation conditions were 100 ng/mL CD40L (R&D Systems; carrier-free) or 5 μg/mL Imiquimod (R837, Invitrogen). For ATAC-seq, 4–6 wells were plated per condition. After 2 days, cells were pooled and sorted as FSC-A, SSC-A, Live, Singlets, CD123+ HLA-DR+ (see Figure S4A for sorting strategy). For analysis of IFN-I production in Figure 6G, pDCs were re-sorted into “pDC-like,” “tDC-like,” and “cDC-like” after 2 days of stimulation with CD40L, then stimulated for 24h with 5 μg/mL CpG-A (ODN 2216, Invivogen).
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3

Measuring IL-10 Production in PBMCs

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The Bregs show an immunosuppressive function by the production of IL-10. For measuring IL-10 production, we stimulated the thawed PBMCs of five PR and five HC in two ways [according to Siewe et al. (31 (link), 33 (link))]. First, the cells (106 PBMCs/ml) were incubated for 48 h with 10 µg/ml CPG-B (oligodeoxynucleotide-2006), 2 µg/ml PAM (palmitoyl-3-cysteine-serine-lysine-4), and 2 µg/ml CD40L (all InvivoGen, San Diego, CA, USA) at 37°C and in 5.0% CO2, and during the last 5 h, the cells were supplemented with 1 µg/ml ionomycin, 50 ng/ml phorbol-12-myristate-13-acetate (PMA), 50 µg/ml brefeldin A (all Sigma), and 1 µl/ml monensin (BD Golgi Stop™ BD Biosciences). Second, we only stimulated the cells with ionomycin/PMA. After 2 h of incubation at 37°C/5.0% CO2, brefeldin A and monensin were added, and the cells were incubated for another 5 h. After the incubation, the cells were washed and stained intracellularly for IL-10. The background range was <0.02% for IL-10 production.
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4

Purification and Stimulation of Plasmacytoid Dendritic Cells

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Prior to cell culture, pDCs were purified by sorting to be free of tDCs (AXL), following the gating strategy in Figure S3A. 10,000 sorted bona fide pDCs were cultured in 200 μL R10 complete media consisting of RPMI (Corning) with 10% FBS, 2 mM L-glutamine (Corning), 100 IU Penicillin, 100 mg/mL Streptomycin (Corning), 25 mM HEPES (Corning), 1 mM Sodium Pyruvate (Corning), 100 mM MEM Nonessential Amino Acids (Corning) and 55 mM 2-Mercaptoethanol (GIBCO) in 96 well U-bottom plates at 37°C. All conditions included 10 ng/mL recombinant human IL-3 (R&D Systems; carrier-free) for pDC survival. Stimulation conditions were 100 ng/mL CD40L (R&D Systems; carrier-free) or 5 μg/mL Imiquimod (R837, Invitrogen). For ATAC-seq, 4–6 wells were plated per condition. After 2 days, cells were pooled and sorted as FSC-A, SSC-A, Live, Singlets, CD123+ HLA-DR+ (see Figure S4A for sorting strategy). For analysis of IFN-I production in Figure 6G, pDCs were re-sorted into “pDC-like,” “tDC-like,” and “cDC-like” after 2 days of stimulation with CD40L, then stimulated for 24h with 5 μg/mL CpG-A (ODN 2216, Invivogen).
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