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3 protocols using powerpac basic system

1

Quantifying Protein Phosphorylation Dynamics

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SMG-C6 cells were lysed in ice-cold RIPA buffer (GenDEPOT, Barker, TX; R4200-010) and protein concentrations were measured using s spectrophotometer (Nanodrop; Thermo Fischer Scientific, ND-1000). Protein samples were separated using 10% SDS-PAGE gels (Bio-Rad, Hercules, CA). After electrophoresis in a Power-Pac Basic system (Bio-Rad), proteins were transferred to nitrocellulose membranes using an iBLOT 2 Dry Blotting system (Thermo Fisher Scientific, IB21001). The membranes were blocked with 10% non-fat milk and incubated with anti-ERK antibodies (1:1000; Cell Signaling Technology, 9102) and anti-pERK antibodies (1:1000; Cell signaling, 9101) at 4 °C overnight. After washing, membranes were incubated with anti-rabbit IgG-HRP (1:5000; Santa Cruz Biotechnology, sc-2030). Immunoreactivity was visualized by ECL reagents (Thermo Fisher Scientific, 32106) and detected by the Chemidoc XRS+ system (Bio-Rad Laboratories).
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2

Purification and Characterization of Hellerin

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HPLC fraction 2 contained a CRiSP, which was confirmed by SDS-PAGE and N-terminal sequencing, and named Hellerin. Purified Hellerin was applied to NuPAGE® Novex 4-12% (w/v) Bis-Tris SDS-PAGE gels (Invitrogen™, Carlsbad, CA, USA). An XCell SureLock™ system (Invitrogen™, Carlsbad, CA, USA) with MES SDS running buffer was run at 100V for 90 min using a Bio-Rad PowerPac Basic system (Bio-Rad Laboratories, CA, USA). SeeBlue® Plus2 markers (Life Technologies™, Carlsbad, CA, USA) were used as standards. The gel was stained with SimplyBlue™ SafeStain (Life Technologies™, Carlsbad, CA, USA).
For the N-terminal sequencing, purified Hellerin was transferred from an SDS-PAGE gel onto a PVDF membrane (Millipore Immobilon, Carrigtwohill, Ireland) using a Semi-Dry Transblot Cell (Bio-Rad) at 100 mA for 1.5 h. The membrane was stained with Coomassie brilliant blue R-250 for 5 min. The sample membrane was processed for N-terminal amino acid sequencing using Edman degradation method (Edman et al., 1950 ; Niall, 1973 (link)) on a PPSQ-33B protein sequencer (SHIMADZU, Kyoto, Japan) following the manufacturer’s instructions. The identity of the primary sequence of Hellerin compared with other proteins was evaluated using Basic Local Alignment Search Tool (BLAST - http://blast.ncbi.nlm.nih.gov/Blast.cgi).
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3

Characterization of Snake Venom CRiSPs

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Purified svCRiSPs (5 µg) were separated by a precast 4–12% (w/v) NuPAGE® Novex Bis-Tris gels (Invitrogen™, Carlsbad, CA, USA) under non-reducing conditions. The gel was run at 100 V for 90 min with MES SDS running buffer using an XCell SureLock™ mini cell electrophoresis system (Invitrogen™) and a PowerPac Basic system (Bio-Rad Laboratories, CA, USA). SeeBlue® Plus2 marker (Life Technologies™, Carlsbad, CA, USA) was used for estimated molecular weight. After electrophoresis, gel was visualized with SimplyBlue™ SafeStain (Life Technologies™).
Crotaline CRiSPs (4 µg) were subjected to SDS-PAGE and transferred to PVDF membrane (Millipore Immobilon, Carrigtwohill, Ireland) using a Transblot® Semi-Dry Transfer Cell (Bio-Rad) at 100 mA for 90 min. The membrane was visualized with Coomassie brilliant blue R-250 staining (0.25% Coomassie Brilliant Blue R-250 in 40% methanol) for 5 min. Then, the protein bands were excised for N-terminal amino acid sequencing. The sequences of crotaline CRiSPs were determined using automated Edman degradation on a PPSQ-33B protein sequencer (SHIMADZU, Kyoto, Japan) according to the manufacturer’s instructions. The N-terminal amino acid sequences of svCRiSPs were identified and compared with other proteins using Basic Local Alignment Search Tool (BLAST—http://blast.ncbi.nlm.nih.gov/Blast.cgi, accessed on 1 April 2020).
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