The largest database of trusted experimental protocols

3 protocols using anti rpa32

1

Quantifying DNA Damage Response Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were plated in 6-well tissue culture-treated plates (Greiner) at 1.75 × 106 cells/well and allowed to rest overnight. Cells were then infected with rAAV 2.5 at equal titers (1.4 × 108 copies/well) or 50 μM etoposide (Sigma) for 20 h. For the EdU-IF experiments, EdU was added to the cells for 20 min. Cells were then permeabilized with 0.5% Triton X-100 in PBS at 4°C for 5 min and fixed in 4% PFA for 20 min. Samples were then washed in 1× PBS and incubated with blocking buffer (3% BSA, 0.05% Tween 20, and 0.04 NaN3 in PBS) for 30 min. Cells were probed with appropriate primary antibodies (anti-FLAG M2 [Sigma-Aldrich], anti-γH2AX, anti-RPA32 [GeneTex], or anti-53BP1 [Cell Signaling]) and then washed in PBST (0.05% Tween 20 in PBS) and probed with Alexa Fluor-conjugated secondary antibodies (Life Technologies). Nuclei were stained with diamidino-2-phenylindole (DAPI; Life Technologies). Secondary staining for EdU was added as the last step and stained twice to ensure signal. Images were acquired on the Zeiss Axio Imager Z1, and mean fluorescence intensity (MFI) was analyzed using ImageJ.
+ Open protocol
+ Expand
2

Western Blotting Analysis of Cell Extracts

Check if the same lab product or an alternative is used in the 5 most similar protocols
The analysis of cell extracts by western blotting was performed as described previously [9 (link)]. For ATR analysis, 6% SDS-PAGE gels were used. Antibodies against phospho-CHK1 Ser345 and phospho-PP1α Thr320 were purchased from Cell Signaling; anti-ATR, anti- CHK1, anti-CdC25A, anti-PP1α and anti-PP2A antibodies were from Santa-Cruz Biotechnology; anti-RPA32 was from Genetex and phospho-RPA32 Ser33 was from Bethyl Laboratories. The anti-Vinculin and phospho-PP2A Tyr307 antibodies were purchased from Abcam. The β-actin antibody was purchased from Sigma-Aldrich and the anti-adaptin antibody from BD Biosciences. The anti-Spi1 antibody was described previously [9 (link)]. Specific peroxidase-conjugated secondary antibodies were used to detect protein expression using the LAS-3000 imager (Fujifilm). Images were cropped using Photoshop software (Adobe Systems France, Paris, France).
+ Open protocol
+ Expand
3

Quantifying DNA Damage Responses

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were plated in 6-well tissue culture treated plates (Greiner) at 1.75 x 10 6 cell/ well and allowed to rest overnight. Cells were then infected with rAAV 2.5 at equal titers (1.4 x 10 8 copies/ well) or 50uM etoposide (Sigma) for 20 hrs. For the EdU-IF experiments, EdU was added to the cells for 20 minutes. Cells were then permeabilized with 0.5% Triton X-100 in PBS at 4˚C for 5 min, fixed in 4% PFA for 20 min. Samples were then washed in 1X PBS and incubated with blocking buffer (3% BSA, 0.05% Tween-20, and 0.04 NaN3 in PBS) for 30 minutes. Cells were probed with appropriate primary antibodies (anti-FLAG M2 [Sigma-Aldrich], anti-gH2AX, anti-RPA32 [GeneTex], or anti-53BP1 [Cell Signaling]), then washed in PBST (0.05% Tween-20 in PBS), and probed with Alexa-Fluor conjugated secondary antibodies (Life Technologies). Nuclei were stained with diamidino-2-phenylindole (DAPI; Life Technologies). Secondary staining for EdU was added as the last step and stained twice to ensure signal. Images were acquired on the Zeiss Axioimager Z1 and mean fluorescence intensity (MFI) was analyzed using ImageJ.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!