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Nanospray flex esi

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Nanospray Flex™ ESI is a compact and versatile ion source for electrospray ionization (ESI) mass spectrometry. It is designed to provide a stable and efficient ionization of a wide range of sample types, including small molecules, peptides, and proteins. The Nanospray Flex™ ESI offers adjustable spray parameters and delivers consistent performance for a variety of applications.

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3 protocols using nanospray flex esi

1

Proteomic Profiling of Lyophilized Samples

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The lyophilized samples were dissolved in 0.1% formic acid solution (solvent A), and injected into a C18 Nano-Trap column (2 cm × 75 μm, 3 μm). The peptides were separated in an analytical column (15 cm × 150 μm, 1.9 μm) with a mobile phrase of 0.1% formic in 80% acetonitrile (solvent B). The samples were eluted by increasing the concentration of solvent B from 6% to 100% over 60 min, maintaining a flow rate of 600 nL/min. The separated peptides were injected into Nanospray Flex ESI with spray voltage of 2.3 kV and were analyzed with an Orbitrap Exploris 480 (Thermo Fisher, Waltham, MA, USA). The UniProt database (http://www.uniprot.org; release-2021_04/) was used to search the raw data for the MS assays. Carbamate was set as a fixed modification. Oxidation of methionine (M) and acetylation of the N-terminus were set as the variable modifications. The label-free proteins were quantified using Proteome Discoverer software version 2.2, one unique peptide for cut-off, with the following parameters: Precursor ion mass tolerance (±15 ppm), fragment ion mass tolerance (±0.02 Da), and Max Missed Cleavages (2). The differential expressed proteins were analyzed with limma package, log2(abundance + 1) treated matrix was used to calculate the p value and log2FC.
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2

Nano-LC-MS/MS analysis of peptides

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Mobile phase A (100% water, 0.1% formic acid) and B solution (80% acetonitrile, 0.1% formic acid) were prepared. The lyophilized powder was dissolved in 10 μL of solution A, centrifuged at 15,000 rpm for 20 min at four ℃, and 1 μg of the supernatant was injected into a home-made C18 Nano-Trap column (2 cm×75 μm, three μm). Peptides were separated in a home-made analyticalcolumn (15 cm×150 μm, 1.9 μm) using linear gradient elution, as listed in Supplemental Table 1. The isolated peptides were analyzed by the Q Exactive series mass spectrometer (Thermo Fisher), with ion source of Nanospray Flex™ ESI , spray voltage of 2.3 kV, and ion transport capillary temperature of 320°C. Full scan range from m/z 350 to 1500 with resolution of 60000 (at m/z 200), an automatic gain control (AGC) target value was 3×10 6, and a maximum ion injection time was 20 ms. The top 20 40 precursors of the highest abundant in the full scan were selected and fragmented by higher-energy collisional dissociation (HCD) and analyzed in MS/MS, where resolution was 15000 (at m/z 200), the automatic gain control (AGC) target value was 5×10 4 , the maximum ion injection time was 45 ms, a normalized collision energy was set as 27%, and intensity threshold was 2.2×10 4 . The dynamic exclusion parameter was 20 s. The raw data of M.S. detection was named as ".raw".
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3

Nano-LC-MS/MS analysis of peptides

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Mobile phase A (100% water, 0.1% formic acid) and B solution (80% acetonitrile, 0.1% formic acid) were prepared. The lyophilized powder was dissolved in 10 μL of solution A, centrifuged at 15,000 rpm for 20 min at four ℃, and 1 μg of the supernatant was injected into a home-made C18 Nano-Trap column (2 cm×75 μm, three μm). Peptides were separated in a home-made analyticalcolumn (15 cm×150 μm, 1.9 μm) using linear gradient elution, as listed in Supplemental Table 1. The isolated peptides were analyzed by the Q Exactive series mass spectrometer (Thermo Fisher), with ion source of Nanospray Flex™ ESI , spray voltage of 2.3 kV, and ion transport capillary temperature of 320°C. Full scan range from m/z 350 to 1500 with resolution of 60000 (at m/z 200), an automatic gain control (AGC) target value was 3×10 6, and a maximum ion injection time was 20 ms. The top 20 40 precursors of the highest abundant in the full scan were selected and fragmented by higher-energy collisional dissociation (HCD) and analyzed in MS/MS, where resolution was 15000 (at m/z 200), the automatic gain control (AGC) target value was 5×10 4 , the maximum ion injection time was 45 ms, a normalized collision energy was set as 27%, and intensity threshold was 2.2×10 4 . The dynamic exclusion parameter was 20 s. The raw data of M.S. detection was named as ".raw".
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