The immunohistochemical analysis was performed to evaluate TAMs in the primary tumour. We obtained 4-µm-thick sections from the tissue microarray blocks and then stained them with anti-CD68 antibody (clone KP1, Dako; 1:50) using a BenchMark ULTRA automated immunohistochemical slide staining system (Ventana Medical Systems, Inc.). For immunohistochemically stained tissue sections with immune markers, the 3 tumour areas with the highest density of immune cell infiltration (hot spots) were photographed using an Olympus BX53 microscope equipped with a DP22 digital camera (Olympus Corporation, Japan) using a 20× objective. CD68+ TAMs were counted on each of the 3 photographs using the manual counting method. The average count of 3 areas was considered as the number of CD68+ TAMs for each patient.
Benchmark ultra automated immunohistochemical slide staining system
The BenchMark ULTRA automated immunohistochemical slide staining system is a laboratory equipment designed for the automated staining of tissue samples. It performs immunohistochemical (IHC) staining procedures on microscope slides.
2 protocols using benchmark ultra automated immunohistochemical slide staining system
Quantification of Tumor-Associated Macrophages
The immunohistochemical analysis was performed to evaluate TAMs in the primary tumour. We obtained 4-µm-thick sections from the tissue microarray blocks and then stained them with anti-CD68 antibody (clone KP1, Dako; 1:50) using a BenchMark ULTRA automated immunohistochemical slide staining system (Ventana Medical Systems, Inc.). For immunohistochemically stained tissue sections with immune markers, the 3 tumour areas with the highest density of immune cell infiltration (hot spots) were photographed using an Olympus BX53 microscope equipped with a DP22 digital camera (Olympus Corporation, Japan) using a 20× objective. CD68+ TAMs were counted on each of the 3 photographs using the manual counting method. The average count of 3 areas was considered as the number of CD68+ TAMs for each patient.
Tissue Microarray CD44 Immunohistochemistry
Subequently, we obtained 4-µm sections from the tissue microarray blocks and stained them with antibodies against CD44s (F10-44-2, Novocastra (Leica, Wetzlar, Germany); 1:50), CD44v6 (VVF-7, Abcam, Cambridge, UK; 1:200), and CD44v9 (CD44V9/1459, Gene Tex, Irvine, CA, USA; 1:200) using a BenchMark ULTRA automated immunohistochemical slide staining system (Ventana Medical Systems, Inc., Oro Valley, AZ, USA). We used diaminobenzidine as the chromogen and hematoxylin as the nuclear counterstain. We also stained positive control tissues in parallel with the study cases.
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