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8 protocols using rabbit anti bdnf antibody

1

LINC01119 Expression Analysis via FISH

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Oligonucleotide-modified probe sequence for LINC01119 was synthesized from GenePharma (Shanghai, China). Tissues were fixed by 4% paraformaldehyde followed by permeabilization with 0.5% Triton at room temperature for 15 min. The probe is pre-denatured at 73°C for 5 min. Then hybridization was performed with 2μM probe at 37°C overnight in a dark moist chamber. After being washed twice in 2 × SSC for 5 min, the slices were incubated with rabbit anti-BDNF antibody (Abcam, cat. no. ab108319). The images were acquired using a fluorescence microscopy ZFM-700 (Carl Zeiss AG, Oberkochen, Germany) rabbit anti-ELAVL1 antibody (1:1000, cat. no. ab200342, Abcam, Cambridge, MA). Experiments were repeated in triplicates.
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2

Intragastric ZBD-2 for SCI Treatment

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All chemicals and reagents utilized in the present study were obtained from Sigma (St. Louis, MO, USA), unless otherwise noted. ZBD-2 was synthesized at our Pharmacologic Lab with a purity of 99.9% and dissolved in saline (0.9% NaCl). ZBD-2 was intragastrically administrated (2 or 4 mg/kg) after SCI. Goat anti-IB-1 antibody was purchased from Santa Cruz Biotech (Santa Cruz, CA, USA). Rabbit anti-BDNF antibody was purchased from Abcam (Cambridge, UK). All chemicals utilized were commercially available and characterized by standard biochemical quality.
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3

Western Blot Analysis of CaMKIIγ and BDNF

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The protein samples of bilateral L4-L6 DRG and L4–6 spinal dorsal horn were collected 2 h after morphine/drugs injection. Protein samples (40 µg total protein per lane) were separated using 10% SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane. The membranes were probed with rabbit anti-CaMKII gamma antibody (1:400, Abcam, Cambridge, MA, USA), rabbit anti-BDNF antibody (1:800, Abcam), rabbit anti-phosphorylated extracellular signal-regulated kinase (p-ERK) antibody (1:800, Cell Signaling Technology, Boston, MA, USA), rabbit anti-phosphorylated cAMP response element binding protein (p-CREB) antibody (1:1000, Cell Signaling Technology), rabbit anti-c-Fos antibody (1:1000, Santa Cruz Biotechnology, Santa Cruz, CA, USA), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 1:50000, Sigma), respectively. Band intensity was quantified using Quantity One Analysis Software (Version 4.6.5, Bio-Rad Laboratories, Hercules, CA, USA). The protein band density of CaMKIIγ and BDNF was measured and normalized against the density of GAPDH. The fold change of the control group was set as 1 for quantifications.24 (link)
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4

Western Blot Analysis of BDNF Levels

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After the tissues of the brain were harvested for western blot, PMC areas were lysed and extracted in a radioimmunoprecipitation (RIPA) buffer containing protease (Protease Inhibitor Cocktail Set I; Calbiochem, Darmstadt, Germany) and phosphatase inhibitors according to the manufacturer's instructions at 4°C. Then, the protein concentrations were determined by the BCA standard. After the preparation of PAGE gels, we loaded the samples, markers, and the loading control according to the comparison demand. Then, protein samples were separated by SDS-PAGE in 12% polyacrylamide gels and electroblotted onto a nitrocellulose membrane (Millipore, USA). After blocking in buffer for 2 h at room temperature, membranes were incubated with rabbit anti-BDNF antibody (1 : 1000) from Abcam, UK. Then, after being washed with PBST for 3 times, membranes were incubated at room temperature for 2 h with the corresponding horseradish peroxidase-conjugated secondary antibody diluted 1 : 1000 in blocking buffer. After washing, signals were detected by enhanced chemiluminescence (ECL Plus; Amersham Biosciences) on Kodak Biomax Light films. The housekeeping gene glyceraldehyde-3-phosphate dehydrogenase (GAPDH) levels were used as the loading control. The assays were performed thrice independently.
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5

Immunohistochemical Analysis of BDNF, SYN, and PSD-95

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As deparaffinization finished, slices were repaired with sodium citrate buffer (0.01 mol/L, pH 6.0). After peroxidase inactivation, phosphate-buffered saline washing and 10% goat serum blocking, sections were incubated overnight at 4°C with the following primary antibodies: rabbit anti- BDNF antibody (1: 800, Abcam, UK), anti-SYN antibody (1: 300, Abcam, UK), and anti- PSD-95 antibody (1: 200, Abcam, UK). Then, the tissues were incubated with horseradish peroxidase-conjugated goat anti-rabbit antibody (1: 300, Zhong Shan Jin Qiao, China) for 1 h at 37°C. 3,3′-diaminobenzidine-4 HCl/H2O2 (DAB, Vector Laboratories, Burlingame, CA, USA) was used for visualization. Hematoxylin was counterstained after BDNF and SYN staining. Images of the motor cortex and the ventral horn region of the lumbar spinal cord were obtained using an optical microscope at 200× and 400× view field by Leica Application Suite (Leica Microsystems, Wetzlar, Germany). Image J software (National Institutes of Health, Bethesda, Maryland, USA) was applied to analyze mean optical density values.
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6

Western Blot Analysis of BDNF, SYN, and PSD-95

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Tissues in the motor cortex and the lumbar spinal cord (L2–4 level) of rats were selected. After homogenization and centrifugation, the supernatants were diluted with loading buffer. The protein samples were separated by 12% sodium dodecyl sulfate-polyacrylamide gel by electrophoresis (SDS-PAGE) and transferred on to polyvinylidene fluoride membranes (Millipore, USA). Then, the membranes were blocked with 5% milk solubilized in Tris-buffered saline with 0.1% Tween 20 at room temperature for 1 h. After that, the membranes were incubated with rabbit anti-BDNF antibody (1: 1000, Abcam, UK), anti-SYN antibody (1: 1000, Abcam, UK), anti- PSD-95 antibody (1: 1000, Abcam, UK), or glyceraldehyde phosphate dehydrogenase (GAPDH) (1: 1000, Proteintech, USA) overnight at 4°C. The next day, the membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit antibody (1: 2000, Zhong Shan Jin Qiao, China) for 1 h at room temperature. Reacting bands were visualized though enhanced chemiluminescence method. Image J software (National Institutes of Health, Bethesda, Maryland, USA) was applied for semi-quantitative analysis of the density of the immunoreactive bands.
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7

Spinal Cord Tissue Staining and Analysis

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After the mice were sacrificed and perfused with 4% paraformaldehyde, the lumbar enlargements of the spinal cord were collected and dehydrated with 15 and 30% sucrose. The processed spinal cord specimens were then fixed with an OCT embedding agent and sliced using a Leica CM1860 cryostat. The sections were permeabilized with 0.1% Triton X-100 in phosphate-buffered saline (PBS). After blocking with 5% donkey serum albumin for 1 h, the sections were incubated with the following primary antibodies: mouse anti-VGluT2 antibody (1:200, Abcam, United States), rabbit anti-NeuN (1:200, Abcam, United States), goat anti-Iba-1 (1:200, Wako, Japan), rabbit anti-GFAP (1:200, Abcam, United States), rabbit anti-SYP (1:200, Abcam, United States), rabbit anti-BDNF antibody (1:200, Abcam, United States), and rabbit anti-TrkB (1:200, Abcam, United States) overnight at 4°C. On the next day, the slides were resined in PBS, and then incubated with the corresponding goat, rabbit, or mouse Alexa Fluor 488 or 594-conjugated secondary IgG antibodies (1:200, Jackson ImmunoResearch, United States) in the dark. The slides were rinsed with PBS and mounted with DAPI Fluoromount-G (SouthernBiotech, United States). Images were obtained using a Leica Observer microscope. The images shown in the figures are representative results from three animals per group.
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8

Protein Expression Analysis of Rat Brain

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The rat brain tissue or cell samples were lysed in RIPA buffer containing phenylmethylsulfonyl uoride (PMSF) and a protease inhibitor cocktail as previously described. Lysates were centrifuged and collected.
Total protein concentration was determined using a BCA Protein Assay Kit (Beyotime). An equal amount of protein ranging from 15 to 30 µg total protein was separated by SDS-PAGE, blotted onto polyvinylidene di uoride (PVDF) membrane (Millipore). The following antibodies were used: rabbit anti-CX3CR1 antibody (1:3000, Abcam), goat anti-CX3CL1 antibody (1:200, Abcam), rabbit anti-BDNF antibody (1:3000, Abcam), rabbit anti-GAPDH antibody (1:3000, Service), goat anti-iba1 (1:500, Woko). Protein bands were visualized using a chemiluminescence system (ChemiDocTM XRS+, BioRad). The protein expressions were semi-quantitatively analyzed with ImageJ software.
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