Acid
urea–polyacrylamide gel electrophoresis (AU-PAGE) Western blot analysis was performed on small intestinal tissue and luminal fluid as previously described.
19 (link),24 Briefly, small intestinal ileal specimens (tissue and luminal aspirate fluid) were homogenized with a Brinkmann Polytron homogenizer in ice-cold 20% acetic acid (1 : 10 w/v) that contained 1 : 100 v/v Protease Inhibitor Cocktail III. The resulting suspension was stirred overnight at 4 °C and clarified the following day by ultracentrifugation (110 000
g × 30 min, 4 °C). Aliquots of these specimens were diluted with 0.5 volume of loading buffer (9 M
urea, 5% v/v acetic acid, 0.1 mg mL
–1 methyl green (Sigma)) and then resolved on polyacrylamide gels (12.5% acrylamide/2%
bis-acrylamide (Roche, Indianapolis, IN), 8 M deionized
urea (Sigma), and 5% v/v acetic acid). Samples were run toward the cathode (reverse typical polarity) at 130 volts in 5% v/v acetic acid running buffer until the
methyl green indicator dye reached the bottom of the gel (typically ≈1.5 h). Proteins were then transferred from the gels to
Immobilon PSQ PVDF membranes in 5% v/v acetic acid using a
semi-dry transfer apparatus (Fisher Scientific, Pittsburgh, PA) at 1.5 mA cm
–2 toward the cathode for 20 min. Each membrane was then fixed, washed, blocked, and probed as described for the dot blot analysis.
Chairatana P., Chu H., Castillo P.A., Shen B., Bevins C.L, & Nolan E.M. (2015). Proteolysis triggers self-assembly and unmasks innate immune function of a human α-defensin peptide †Electronic supplementary information (ESI) available: Tables of amino acid sequences and characterization of peptides employed in this work, calculated sedimentation coefficients, sedimentation velocity results, and sedimentation equilibrium results for proHD6. Figures of characterization of HD6 in ileal fluid, working model of HD6 maturation, SDS-PAGE, HPLC traces, antibacterial activity assays and in vitro trypsin-catalyzed degradation of recombinant proHD6, characterization of products from trypsinized proHD6, TEM of trypsinized proHD6 in Tris-maleate buffer and at different time points, SEM of bacterial agglutination by trypsinized proHD6, cytotoxicity studies of proHD6 and HD6 against T84 cells, sedimentation velocity analysis, and sedimentation equilibrium analysis of proHD6. See DOI: 10.1039/c5sc04194e Click here for additional data file.. Chemical Science, 7(3), 1738-1752.