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30 protocols using horseradish peroxidase

1

Immunohistochemical Analysis of Knee Joint Tissue

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IHC staining was performed on fixed tissue sections using avidin–biotin
peroxidase technique. Briefly, unstained sections were deparaffinized with
xylene and rehydrated with decreasing concentrations of ethanol. Nonspecific
binding was blocked with 4% BSA. Avidin and biotin binding sites contained in
tissue samples were blocked using a commercial avidin–biotin blocking kit
(Vector Laboratories, Burlingame, CA, USA). Sections were then incubated for 30
min at room temperature with following antibodies diluted in phosphate buffered
saline containing BSA and incubated at 4°C for overnight. Sections were washed
in ice-cold saline and incubated with a secondary biotinylated anti-mouse
immunoglobulin G. The activity of endogenous peroxidase was blocked using 0.3%
H2O2 in horseradish peroxidase (Vector Laboratories).
Peroxidase activity was visualized using diaminobenzidine (Vector Laboratories).
This technique uses unlabeled primary antibody, biotinylated secondary antibody,
and a preformed avidin and biotinylated horseradish peroxidase macromolecular
complex. The slides were further rinsed in water and lightly counterstained with
hematoxylin. Besides, knee joint tissue sections were also stained with Col II
and alcian blue to determine the content of cartilage and PG, respectively, in
the ECM of knee joint, and OA grade was assessed using scoring system as
described previously24 (link).
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2

Immunohistochemical Analysis of Mouse Skin

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Standard histology and immunostaining protocols (including H&E and Trichome) were performed. Briefly, immunohistochemical analysis was performed on 5- to 10-μm-thick sections of mouse skin. The following primary antibodies were used: mouse monoclonal anti-Ki-67 (1:100; Novocastra), rabbit polyclonal anti-GFP (1:200; Abcam), rabbit polyclonal anti-Sdf1 (1:100; Abcam), mouse monoclonal anti-α smooth muscle actin (1:100; Abcam), rabbit polyclonal anti-CD31 (1:100; Abcam), rat anti-mouse CD45 (1:100; BioLegend), and rabbit polyclonal anti-Cxcr4 (1:100; Abcam). Immune complexes were detected with secondary antibodies conjugated with either Cy3, Cy5, fluorescein isothiocyanate (Jackson ImmunoResearch), or horseradish peroxidase (Vector Laboratories). In situ hybridization on Cxcl12 was performed per the manufacturer's instructions (Advanced Cell Diagnostics); a positive control probe was directed against RNA polymerase, and a negative control probe was directed against bacterial DapB. After staining, images were directly analyzed on an AxioM1 microscope equipped with a CCD digital camera (Carl Zeiss). The number of Ki-67+ cells was counted for every 250 μm of cartilage, measured at the distal tip, for each sample. A minimum of four different samples was used for each time point and then averaged.
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3

Immunohistochemical Analysis of ALOX15 and ALOX15B in Amnion

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Immunohistochemical staining was carried out on paraffin-embedded amnion tissue sections prepared from TNL (n = 3). After deparaffinization and quenching the endogenous peroxidase activity with 0.3% H2O2, the section was incubated with normal serum to block the nonspecific binding site, followed by incubation with primary antibodies against human ALOX15 (Thermo Fisher; #MA5-25853) and ALOX15B (Thermo Fisher; #PA5-97456) at 1:100 dilution or with nonimmune serum (Proteintech) for negative control overnight at 4°C. After washing, the section was incubated consecutively with a corresponding biotinylated secondary antibody and the avidin-biotin complex conjugated with horseradish peroxidase (Vector Laboratories, Burlingame, CA). The horseradish peroxidase activity was developed as a red color with the substrate 3-amino-9-ethyl carbazole (Vector Laboratories). The slide was counterstained with hematoxylin (blue color) and examined under a regular bright field microscope (Zeiss, Oberkochen, Germany).
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4

GFP Immunohistochemistry Visualization Protocol

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Immunohistochemistry (IHC) was performed on free-floating sections as previously described.54 (link) Primary antibodies used were rabbit anti-GFP (Abcam ab290, 1:20,000). Following the primary incubation, sections destined for stereology (GFP) were incubated in biotinylated secondary antibodies against rabbit IgG (Millipore AP132b 1:500; Merck Millipore) for 2 hr at room temperature, treated with Vector ABC detection kit using horseradish peroxidase (Vector Laboratories). GFP expression was visualized by treatment of 0.5 mg/mL 3,3′ diaminobenzidine and 0.03% hydrogen peroxide in Tris buffer. Sections were mounted on subbed slides, dehydrated with increasing concentrations of ethanol followed by xylene, and coverslipped with Cytoseal (Thermo Fisher Scientific).
Images were taken on a Nikon Eclipse 90i microscope with a QICAM camera (QImaging). Images were taken from subjects that displayed mean transduction as measured by stereological cell counts and created in Photoshop 7.0, with brightness, saturation, and sharpness adjusted only as needed to best represent the immunostaining as viewed directly in the microscope.
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5

Comparative MBP Expression in Recovered Mice

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MBP expression was compared between control and recovered mice by assessing Western blot. Total protein was extracted separately from the hippocampus and cerebellum (n = 4 per group) using T-PER tissue protein extraction buffer (Pierce, USA). The concentration of the extracted protein was measured using a BCA protein assay kit (Pierce). Proteins were subjected to SDS-PAGE, followed by electrotransfer to PVDF membranes (Millipore, USA). Protein-transferred membranes were blocked with 5% skim milk in 0.1% Tris-buffered saline/Tween-20. The blots were probed with a primary antibody against MBP (1:1,000; Millipore), overnight at 4℃. β-Actin was used as a loading control (1:10,000; Sigma-Aldrich, USA). After incubation, the membranes were subsequently incubated for 2 h at room temperature with the appropriate secondary antibodies conjugated with horseradish peroxidase (Vector, USA). The protein bands were visualized with SuperSignal West Pico Chemiluminescent Substrate (Pierce). The bands were captured and intensity quantification followed by using the Luminescent Image Analyzer System LAS 4000 with image analysis software (Fuji, USA).
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6

Western Blot Analysis of Catalase and Calnexin in Lung Tissues

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Lung tissues were homogenized using RIPA buffer, and 10 μg proteins were separated on a NuPAGETM 4–12% Bis-Tris protein gel (Invitrogen, Carlsbad, CA, USA) followed by protein transferring onto nitrocellulose membranes. The blots were blocked for 1 h at room temperature with 5% BSA, and then, probed with primary antibodies against catalase (Cat#: ab16731, Abcam, Cambridge, UK) and calnexin (ADI-SPA-860-F, Enzo Life Science, Nassau County, NY, USA) at 4 °C overnight. Protein levels were detected using secondary antibodies in 5% BSA in PBS containing 0.1% Tween (v/v) 20 for 1 h) linked to horseradish peroxidase (Vector Laboratories, Burlingame, CA, USA), and bound complexes were detected by the ChemiDocTM Touch Imaging System (BIO-RAD, Hercules, CA, USA) using the enhanced chemiluminescence method (Millipore, Burlington, MA, USA).
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7

Endothelial Cell Culture and Angiogenesis Assay

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Human fibronectin (BD Biosciences#356008), Matrigel Basement Membrane Matrix Growth Factor Reduced (BD#354230), IGF-1(Sigma), VEGF-A165 (#293-VE R&D systems); Antibodies used included the following: anti-CD31 (BD#55370), anti–VE-cadherin (Santa Cruz#SC6458), antiphospho p44/42 MAP kinase (phospho-ERK, Cell Signaling#9106), anti-p44/42 MAP kinase (total ERK, Cell Signaling#9102), anti-PTP1b (Santa Cruz#sc-1718), anti phospho IGF-1 receptor β (Tyr1131) (CS#3921), anti IGF-1 receptor β (CS#3027). We used appropriate secondary antibodies that were conjugated to horseradish peroxidase (Vector Laboratories) or fluorescently labeled (Life Technologies). IsolectinB4 was purchased from Molecular Probes (Invitrogen).
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8

Quantification of Metabolic Protein Levels

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Western blot was performed as we described previously (19 (link)). The membranes were blocked for 1 hour at room temperature with 5% BSA and then probed with 1:200–1:1000 diluted antibodies against PGD, G6PD, PKM, PFKFB3, Glut1, Glut4, and GAPDH to determine the corresponding proteins. Information of antibodies is shown in Table 1. Protein levels were detected using secondary antibodies (1: 5,000 dilutions in 5% BSA in PBS containing 0.1% Tween [v/v] 20 for 1 hour) linked to horseradish peroxidase (Vector Laboratories), and bound complexes were detected by the ChemiDoc Touch Imaging System (Bio-Rad) using the enhanced chemiluminescence method (MilliporeSigma). Equal loading of the samples was determined by quantification of proteins, as well as by reprobing membranes for the housekeeping control calnexin.
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9

Western Blot Analysis of Tumor Proteins

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Isolated tumors were homogenized with a polytron to obtain total fractions for Western Blot as previously described [45 (link)]. Similar amounts of protein extracts, as determined by Lowry, were loaded into each lane, separated by SDS-polyacrylamide gel and transferred to nitrocellulose membranes. The residual binding sites were blocked with 5% non-fat powdered milk in PBS containing 0.05% Tween 20, and membranes were incubated in PBS containing 0.05% Tween 20 with antibodies to p21 (1:300), Caspase-3 (1:1500) (Santa Cruz Biotechnology, Dallas, TX), MRP4 (1/50, Thermo Fisher Scientific, Waltham, MA) and α-tubulin (1:5000, Cell signaling Technology, Beverly, CA) overnight at 4 ºC. All subsequent washes were performed with the same buffer. Reactivity was developed using an anti-rabbit or anti-mouse polyclonal antibody linked to horseradish peroxidase (Vector) and developed by enhanced chemiluminescence (ECL) following the manufacturer's instructions (Amersham, GE Healthcare Lifesciences, Pittsburgh, PA).
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10

Immunohistochemical Analysis of Aortic Tissue

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Cross sections (4 μm thick) of the suprarenal abdominal aorta tissue were used for histological analysis. The aortic cross sections were deparaffinized and hydrated in order, then rinsed 3 times with tap water, and hyperbaric heating antigenic repair for 3–5 min, and then rinsed with several changes of PBS, followed by blocking with 5% goat serum in PBS for 30 min. Slides were incubated with rabbit anti-mouse RANTES immunoglobulin G (IgG), rabbit anti-mouse MCP-1 IgG, rabbit anti-mouse MMP-2, rabbit anti-mouse MMP-9, or reagent-grade nonimmune rat IgG (R&D Systems, Minneapolis, MN, USA) overnight at 4°C in a humidified chamber. Then, the slides were incubated with biotin-conjugated goat anti-rabbit IgG (1 : 200 in PBS; Vector Laboratories, Burlingame, CA, USA) for 30 min at room temperature, followed by incubation with the horseradish peroxidase-conjugated avidin/biotin complex for 10 min. Immune complexes were detected with horseradish peroxidase substrate (Vector Laboratories, Burlingame, CA, USA). Sections were counterstained with hematoxylin before examination with light microscopy.
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