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166 protocols using uv 2401pc

1

Protease Production from Mangrove Bacterium

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The protease-producing bacterium, termed KB111, used in this study was previously isolated (13 ) from mangrove forest sediments in Thailand. It exhibited a clear zone surrounding the colonies on skimmed milk agar and exhibited the highest protease activity in liquid medium. KB111 was inoculated in 5 mL of nutrient broth containing 0.5 M NaCl and cultured in a rotary shaker (WDS28; PolyScience, Niles, IL, USA) at 180 rpm and 37 °C. After that, cells were harvested for 8 to 64 h. The absorption of the cultures was checked at 600 nm by a UV spectrophotometer (UV-2401PC; Shimadzu, Kyoto, Japan). The cell cultures were harvested at 14 000×g (U-320R; Boeco, Hamburg, Germany) for 5 min at 4 °C and the crude enzyme supernatant was collected for the protease assay using azocasein as protein substrate. The reaction mixture containing 30 µL of the crude enzyme, 270 µL of 50 mM Tris-HCl (pH=7) and 20 mg/mL azocasein was incubated at room temperature (25 °C) for 30 min. Aliquots were withdrawn to determine the activity, as described in the enzymatic activity section.
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2

Characterization of Capsule Morphology and Loading

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The morphology and size distribution of capsules were characterized using scanning electron microscopy (SEM, Quanta 450 FEG ESEM) and dynamic light scattering (DLS, Litesizer 500, Anton Paar), respectively. The core loading of capsules was determined using UV-visible spectroscopy (UV-2401 PC, Shimadzu, Japan) according to a method reported in our previous work [12 (link)]. Briefly, capsules were first dissolved in a 40:60 vol/vol mixture of tetrahydrofuran and methanol at 1 g/L concentration. The solution was diluted with distilled water at a 1:9 volume ratio to precipitate and remove the shell polymer. The absorbance of VVe at 280 nm was then measured and compared with a linear calibration curve created using known concentrations of VVe in the same solvent mixture to calculate the concentration of VVe (cvv). Capsule core loading was calculated as,
L=cvvVsdMcap×100
where Vs is the volume of diluted solution used in UV-vis measurements, d is the dilution ratio (10 in this study), and Mcap is the mass of capsules.
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3

Quantifying Browning and UV-Absorbance of MRPs

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Browning intensities and UV-absorbance of these MRPs were determined according to the methods published by Jiang et al. (2013) (link), with slight modifications. The degree of browning (DB) and UV-absorbance of these MRPs were assessed by absorbance readings at 420 and 294 nm against water using a UV-visible spectrophotometer (UV-2401PC; Shimadzu Co., Ltd., Kyoto, Japan). Samples were diluted 4-fold and 16-fold with deionized water for browning intensity and UV-absorbance analysis, respectively.
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4

Decolorization and Mineralization Kinetics

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Decolorization was calculated from the initial dye concentration and dye concentration at time t (C0 and Ct, respectively) by measuring the absorbance at the visible maximum absorption wavelength (583 nm for RB5 and 617 nm for Rb7). Decolorization (D) was reported in %:

Absorbance measurements were carried out with a UV–vis spectrophotometer (Shimadzu UV-2401 PC, Kyoto, Japan). In the working range, the dye absorbance (Abs) has a linear behavior versus the dye concentration (conc), according to the Equations (2) and (3):


The total organic carbon (TOC) was determined with a Shimadzu TOC5050A analyzer (Kyoto, Japan). The % degradation was calculated according to Equation (4).

where TOC0 corresponds to the initial value and TOCt is the value at time t.
In accordance with our previous studies [28 (link)], the dye degradation follows a first-order reaction with an electrochemical treatment. The discoloration rate constants (kD) were calculated from the slope of the semilogarithmic plot of absorbance versus treatment time (t) following the kinetic Equation (5).

The mineralization rate constants (kM) were calculated from the slope of the semilogarithmic plot of TOC versus treatment time (t), in accordance with Equation (6).

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5

Spectroscopic Analysis of AmB Formulations

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AmB UV-visible absorption spectra of the diluted preparations were acquired at 300–450 nm (0.5 nm steps, slits 0.5) in a Shimadzu UV-2401PC and using a 3 mm quartz cell at room temperature. The aggregation state of encapsulated AmB was assessed by the ratio of the first aand last peak (I/IV) in the absorbance spectra [19 ]. Circular dichroism (CD) spectra were acquired in a Jasco J-810 spectropolarimeter. The CD spectra were recorded (300–450 nm) by using a 10 mm quartz cell at room temperature. The setup parameters used were resolution 0.5 nm, bandwidth 4 nm, sensitivity 2 s, and scan speed 100 nm/min. Three scans were acquired and averaged for each sample. Raw data were manipulated by subtraction of the appropriate background spectra containing the corresponding ASCn in the buffer at pH 4 or pH 8.
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6

Liver Cytokine mRNA Expression Analysis

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The mRNA expressions of TNF-α, IL-1β, IL-6, cyclo-oxygenase (COX)-2, and inducible nitric oxide synthase (iNOS) in liver were measured by RT-PCR. Total RNA was isolated from liver tissues using Trizol reagent (Invitrogen, Carlsbad, CA, USA), chloroform was added, and the mixtures were centrifuged at 13,000 g for 15 min at 4°C. Isopropanol was added to the supernatants at a 1:1 v/v ratio and RNA pellets were obtained by centrifugation (13,000 g, 15 min). After washing the pellets with ethanol, extracted RNAs were solubilized in diethyl pyrocarbonate-treated RNase-free water and quantified by measuring absorbance at 260 nm using spectrophotometer (Shimadzu UV-2401PC, Shimadzu Corp., Tokyo, Japan). Equal amounts of RNA (1 μg) were reverse transcribed in a master mix containing 5× reverse transcriptase buffer, 0.1 M dithiothreitol, 2.5 mM dNTPs, moloney murine leukemia virus reverse transcriptase, and RNase inhibitor (Invitrogen) for 2 h at 37°C. Polymerase chain reactions were carried out using an automatic BIONEER thermocycler (Bioneer, Daejeon, South Korea). Amplified PCR products were electrophoresed on 2% agarose gels and visualized by ethidium bromide (EB) staining. GAPDH was used as the internal control.
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7

Spectrophotometric Determination of SUVA254 and TOC

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The specific UV absorbance (SUVA254) corresponds to the ratio of UV absorbance at wavelength of 254 nm, measured in a 1 cm quartz cuvette using a UV–vis spectrophotometer (UV-2401PC, Shimadzu, Kyoto, Japan) and TOC value [15 (link)]. TOC analysis was performed using a TOC-VCSN Shimadzu analyzer (Shimadzu Japan).
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8

Thermal Denaturation Melting Assay

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Thermal denaturation melting experiments were performed in a UV-Vis spectrophotometer (Shimadzu UV-2401PC). 900 μL of RNA-DNA hybrid nanoshape sample solution at 0.5 μM concentration was prepared with degassed buffer solution, transferred in a 1 cm quartz cuvette and covered with an oil layer to prevent evaporation. The temperature was raised from 15 to 80 °C at a rate of 0.5 °C per minute using a controlled temperature recirculating water system (Lauda RE 206), measuring the absorption every 1 °C at 260 nm.
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9

UV-Vis Spectroscopy and pH Measurement

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A double-beam UV–Vis spectrometer (UV-2401 PC, Shimadzu Co., Japan) was used for collecting absorptions in the UV–Vis range. Spectra were recorded quadruply and averaged for noise reduction. Samples were placed in quartz cells with 20 mm path length and recorded digitally in the wavelength range 345–570 nm in 0.1 nm steps with a slit width of 1 nm.
Determination of pH was made by a glass combination electrode (ELMETRON pH-meter Cp-315 Co., Zabrze, Poland) following the 5-point calibration scheme described by IUPAC [41 (link), 42 (link)]. The calibration pH standard solution was traceable material (Merck Co., Darmstadt, Germany).
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10

Total Phenolic Content Quantification

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The total phenolic content was determined using the Folin–Ciocalteu method previously described by Gao et al. [41 (link)]. A sample extract of 0.1 mL was mixed with 0.2 mL of Folin–Ciocalteu reagent and 2 mL of water. This mixture was incubated at room temperature for 3 min, subsequently added with 1 mL of 20% sodium carbonate and was incubated at room temperature for 1 h. The absorbance was measured using an ultraviolet–visible light spectrophotometer (Shimadzu, UV-2401 PC, Kyoto, Japan) at a wavelength of 765 nm. Quantification was performed on the basis of the gallic acid standard curve constructed, and results were expressed as gallic acid equivalence in milligrams per 100 g of dw. All determinations were performed in triplicate.
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