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Jem 1011 transmission electron microscope

Manufactured by JEOL
Sourced in Japan, United States, Germany

The JEM-1011 is a transmission electron microscope (TEM) manufactured by JEOL. It is designed to provide high-resolution imaging and analysis of small-scale structures and materials. The JEM-1011 allows users to observe and investigate samples at the nanometer scale.

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207 protocols using jem 1011 transmission electron microscope

1

Ultrastructural Localization of Parasite Proteins

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Parasites (2 × 107) grown under different glucose conditions were fixed in 2.5% glutaraldehyde in 0.1 M sodium cacodylate buffer at pH 7.2 at RT, treated with 1% (w/v) osmium tetroxide, and dehydrated with increasing concentrations of ethanol. Samples were transferred to propylene oxide and then successively to propylene oxide/LR-White resin mixtures at ratios of 1:1 and 2:1, embedded in LR-White resin, and polymerized at 56 °C overnight. Thin sections (60 nm) were obtained and incubated overnight at RT with the Mα-TvLEGU-2pep (mouse, 1:10) primary antibody, washed, and incubated with gold-conjugated anti-mouse IgG (1:60 dilution using 15 nm gold particles) as a secondary antibody (Ted Pella Inc., Redding, CA, USA). For double labeling, the sections were incubated with Mα-TvLEGU-2pep/RαTvPFO50r and Mα-TvLEGU-2pep/RαrTvAtg8b primary antibody combinations (both at 1:10 dilution). gold-conjugated anti-mouse IgG (1:60 dilution; 15 nm gold particles) and anti-rabbit IgG (1:60 dilution; 30 nm gold particles) were used as secondary antibodies (Ted Pella Inc.). The samples were counterstained with uranyl acetate and lead citrate. Samples incubated with PI serum or only the secondary antibodies were used as negative controls. A JEOL JEM-1011 transmission electron microscope was used (JEOL Ltd., Tokyo, Japan).
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2

Viral Particle Isolation from Diarrhea Samples

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Fecal samples from the 2021 diarrhea outbreak (n = 16) were diluted to 10% in deionized water and separated into two aliquots. The first aliquot was clarified by a 2 min centrifugation at 12,000× g and a formvar, carbon-coated, 400-mesh copper grid was floated on a 50 µL drop of the supernatant for 15 min. Excess supernatant was removed from the grid with filter paper and stained with 3% aqueous phosphotungstic acid, pH 7.0, for 1 min. The second aliquot was first centrifuged at 1000× g for 15 min and the supernatant was subsequently centrifuged at 10,000× g for 30 min and 40,000× g for 1 h. The supernatant was discarded, and the pellet was resuspended in purified deionized water and a 50 µL drop of the resuspension was stained as indicated above. Grids were viewed with a JEOL JEM-1011 Transmission Electron Microscope at an accelerating voltage of 100 kV (JEOL USA, Inc., Peabody, MA, USA). Representative viral particles were digitally imaged using an XR80M Wide-Angle Multi-Discipline Mid-Mount CCD Camera from AMT (Advanced Microscopy Techniques, Woburn, MA, USA).
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3

Ultrastructural Analysis of Oral Tissues

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Oral proliferative tissue and lip skin samples were immediately fixed in 4% glutaraldehyde in 0.1 M phosphate buffer (pH 7.4) for 2–3 h. They were washed (20 min 5 times) and post fixed in 1% OsO4 in the same buffer for 1 h. They were washed again in 0.1 M phosphate buffer (pH 7.4) and then dehydrated in graded alcohol and embedded in Agar Low Viscosity Resin (Agar Scientific Limited, Essex, England). Semi-thin section (400 nm) were cut on an EM UC6 ultramicrotome (Leica Microsystems) and were stained with 1% toluidine blue in water solution and examined by Leica DM 4000 B optical microscope. Ultra thin sections (60–70 nm), obtained from chosen areas, were collected onto 300-mesh grids coated with formvar and counterstained with lead citrate and uranyl acetate. The sections were observed with a JEOL JEM-1011 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a thermionic tungsten filament and operated at an acceleration voltage of 100 kV. Images were taken using a Morada cooled slow-scan CCD camera (3783 × 2672 pixels) and micrographs were taken with iTEM software (Olympus Soft Imaging System GmbH, Munster, Germany).
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4

Visualizing Protein-Induced Liposome Deformation

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Large unilamellar vesicles were prepared as described before [11 (link), 12 (link)]. Briefly, L-α-phosphatidylcholin (PC), L-α-phosphatidylethanolamine (PE), L-α-phosphatidylserine (PS) and L-α-Phosphatidylinositol-4,5-bisphosphate (PIP2) were obtained from Avanti Polar Lipids (Alabaster, AL).
To observe the protein-induced deformation of LUVs (as described before [13 (link), 14 (link)]), liposomes (0.2 mg/ml) were incubated with ENTH domain or it’s mutants (15 µM) at 30 °C for 3 h. The samples were subsequently diluted to 0.2 mg/ml of liposomes with HEPES buffer (200 mM NaCl, 10 mM HEPES/NaOH, pH 7.4) and 5 µl of the suspension was then transferred onto a formvar carbon coated copper grid (Agar Scientific Ltd., Essex, UK) and incubated for 1 min at room temperature. The suspension was removed and the grid was set onto a droplet (50 µl) of 3% uranyl acetate for negative staining.
Electron microscopic visualization was performed with a JEOL JEM 1011 transmission electron microscope (JEOL Ltd., Akishima, Japan) and a Gatan Orius 1000 CCS detector (Gatan Inc., Pleasanton, USA).
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5

Ultrastructural Analysis of Neurospheres

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Neurospheres (untreated, vehicle or compound-treated) were fixed at different differentiation stages in a fixative solution containing 3.2% PFA, 0.2% glutaraldehyde, 1% sucrose, 40 mM CaCl2 in 0.1 M cacodylate buffer (pH 7.4) for 12 h at 4 °C. Samples for ultrastructural analysis were embedded in 1.5% agar (dissolved in dH2O), post-fixed in 1% ferrocyanide-reduced osmium tetroxide [37 (link)], then dehydrated using graded series of ethanol, finally embedded in Spurr low viscosity epoxy resin medium. Ultrathin sections were collected from the middle region of the spheroids (highest diameter) on copper slot grids coated with formwar (Agar Sci., Essex, UK) and counterstained with uranyl acetate and Reynolds’s lead citrate. Sections were examined with a JEOL JEM 1011 transmission electron microscope (JEOL Ltd., Tokyo, Japan) equipped with a Morada 11-megapixel camera using iTEM software (Olympus).
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6

Transmission Electron Microscopy Sample Preparation

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After co-incubation, the medium was removed from the samples and then was fixed with 2.5% glutaraldehyde in a 0.1 M cacodylate buffer, at room temperature, and post-fixed with 1% osmium tetroxide as well as dehydrated with increasing concentrations of ethanol. Samples were transferred to propylene oxide, later to a mixture of propylene oxide/epoxy resin—(1/1), (2/1), and (3/1)—and embedded in epoxy resins. Ultra-thin sections (60 nm) were obtained and stained with uranyl acetate and lead citrate. Finally, sections were observed in a JEOL JEM–1011 transmission electron microscope (JEOL Ltd. Tokyo, Japan).
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7

Ultrastructural Analysis of hMSCs

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Transmission electron microscopy analysis was carried out on the hMSCs (5000 cell/cm2) cultured on Thermanox coverslips (Thermo Fisher Scientific, Milano, Italy) for 21 days in neutral and acidic osteogenic medium. At the endpoint, the cell monolayer was fixed with 2.5% glutaraldehyde in 0.1 M cacodylate buffer pH 7.4 for 1 h. After fixation, the samples were post-fixed with 1% osmium tetroxide, dehydrated in a graded series of ethanol, and embedded in Epon. Ultrathin sections were stained with uranyl acetate and lead citrate, and observed with a Jeol Jem-1011 transmission electron microscope (Jeol Jem, Peabody, MA, USA). The images were captured using a Morada digital camera and iTEM software.
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8

Transmission Electron Microscopy of Liver

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Small slices of liver were fixed in 3% glutaraldehyde in sodium phosphate buffer (200 mM, pH7.2) for 3 h at 4°C. Materials were washed in the same buffer and postfixed in cold 1% osmium tetroxide (Agar Sci. Ltd., England) for 1 h. After flushing in phosphate buffer, the tissue samples were dehydrated in graded ethanol solutions and embedded in Araldite (Agar Sci. Ltd., England). Thin sections (80–100 nm) were cut using Leica EM UC6 (Leica Co., Austria) ultramicrotome. Sections were mounted on grids and double stained with 2% uranyl acetate and lead citrate. Sections were viewed and photographed on Jeol JEM 1011 transmission electron microscope (Jeol Ltd., Japan) at 80 kV.
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9

Characterization of Optimized FLB TRFs

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For investigation of vesicle size, polydispersity index (PDI), and zeta potential of the optimized FLB TRFs, the same method mentioned in Section 2.4 using a Malvern size analyzer was employed. In addition, optimized FLB TRFs were subjected to transmission electron microscopy (TEM). A sample was placed on a copper grid and stained using phosphotungstic acid. After removing excess stain, the stained sample was dried and studied using a JEOL-JEM-1011 transmission electron microscope (JEOL, Tokyo, Japan).
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10

Phage Morphology Visualization by TEM

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The mutant and wild type-phages were observed by TEM. For this, 15 μL of each purified phage sample were transferred to a 400 mesh copper grid with a pure carbon film (Electron Microscopy Sciences), incubated for three minutes on the grid and removed using filter paper. Grids were then washed with two drops of Milli-Q water and the water removed using filter paper. Then, four assessments were performed: i) no treatment, with samples on grid left to dry without further treatment; ii) negative staining with 1% uranyl acetate solution, performed for 30 seconds followed by removal of all liquid using filter paper; iii) exposure of the dried grids to osmium vapours (from recrystallized osmium tetroxide) for 1.5 h; and iv) incubation with glutaraldehyde/paraformaldehyde fixative for 10 min, washing with two drops of water, drying and exposure for 1.5 hours to osmium vapor. Imaging was performed using a JEOL JEM 1011 transmission electron microscope (JEOL Ltd.).
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