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417 protocols using nah2po4

1

Fungal Infection Control in Triticale Grains

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Triticale grains (Triticum aestivum L. emend. Fiori et Paol) were obtained from local commercial suppliers. Wheat grains with known seed-borne Fusarium infections were obtained from the Human Microbiology Institute (New York, NY, USA). Potato dextrose agar (PDA; Thermo Fisher Scientific Inc., Waltham, MA, USA) was used as a growth medium for seed germination.
Grains in the control group were sterilized according to Htwe et al. (2011) (link), with minor modifications. Briefly, uniformly sized grains were washed in a solution of 4.5% (w/v) NaOCl:water (1:1 ratio) for 20 min. For the experimental groups, uniformly sized grains were treated with different concentrations of three different solutions: 1) 0.1% and 0.05% M451 (a water-based solution of TGV-28 [Figure 1]; Human Microbiology Institute) in combination with 0.01% NaH2PO4 (Sigma Aldrich, St. Louis, MO, USA) for 30 min, 2) 0.01% NaH2PO4 for 30 min (Sigma Aldrich), and 3) Maxim XL v/v1:10 dilution in water for 12 h according to the manufacturer’s instructions (Syngenta Canada Inc., Guelph, ON, Canada) (Costa et al., 2019 (link); Pfeiffer et al., 2021 (link)). Subsequently, the grains from control and M451-treated groups were washed three times with autoclaved distilled water and then air-dried on filter paper. The grains treated with Maxim XL were left unwashed.
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2

Acute Brain Slice Preparation

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Rats were deeply anesthetized with isoflurane (Kent Scientific) and euthanized by decapitation. The brain was rapidly dissected and glued on a platform submerged in an ice-cold oxygenated (95% O2/5% CO2) cutting solution containing (in mM): 206 sucrose (Sigma-Aldrich), 10 D-glucose (Sigma-Aldrich), 1.25 NaH2PO4 (Sigma-Aldrich), 26 NaHCO3 (Sigma-Aldrich), 2 KCl (Fisher Chemical), 0.4 sodium ascorbic acid (Sigma-Aldrich), 2 MgSO4 (Sigma-Aldrich), 1 CaCl2 (Sigma-Aldrich), and 1 MgCl2 (Sigma-Aldrich). A mid-sagittal cut was made to divide the two hemispheres, and coronal brain slices (300 μm) were cut using a vibrating blade microtome (Leica VT1200). The brain slices were transferred to a holding chamber with oxygenated artificial CSF (ACSF) containing (in mM): 119 NaCl (Sigma-Aldrich), 2.5 KCl (Fisher Chemical), 1 NaH2PO4 (Sigma-Aldrich), 26.2 NaHCO3 (Sigma-Aldrich), 11 D-glucose (Sigma-Aldrich), 1 sodium ascorbic acid (Sigma-Aldrich), 1.3 MgSO4 (Sigma-Aldrich), and 2.5 CaCl2 (Sigma-Aldrich; ∼295 mOsm, pH 7.2–7.3) at 37°C for 20 min and then room temperature for at least 40 min of rest. The slices were kept submerged in oxygenated ACSF in a holding chamber at room temperature for up to 7–8 h after slicing.
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3

Brain Slice Preparation and Electrophysiology

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Mice were killed 3 h following water or saccharin consumption by decapitation, following anesthesia with isoflurane. Brain slices were cut at 300 μm in coronal sections using a vibratome (Campden-1000) in ice chilled cutting solution (110 mm sucrose, 60 mm NaCl, 3 mm KCl, 1.25 mm NaH2PO4, 28 mm NaHCO3, 0.5 mm CaCl2, 7 mm MgCl2, 5 mm D-glucose, and 0.6 mm ascorbate, Sigma-Aldrich). The slices were placed in artificial CSF (ACSF; 125 mm NaCl, 2.5 mm KCl, 1.25 mm NaH2PO4, 25 mm NaHCO3, 25 mm D-glucose, 2 mm CaCl2, and 1 mm MgCl2, Sigma-Aldrich) for a 30 min recovery period at 37°C and then kept at room temperature for at least an additional 30 min before electrophysiological recording. Throughout, ACSF was continually gassed, using carbogen (O2 95%, CO2 5%).
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4

Protein G-based IgG Purification Protocol

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The total IgG was purified from the FF by using Protein G-agarose (Sigma Aldrich, USA) according to the manufacturer instructions. Briefly, 100 µl of the FF was diluted 10x in 20 Mm NaH2PO4 (pH 7.0; Sigma Aldrich, USA) and incubated with 50 µl of homogenous Protein G-agarose suspension overnight at 4 °C. After incubation, the remaining FF supernatant, which contained FF total proteomes separated from the main IgG fraction, was stored at -80°C, while the agarose beads with bound IgG were first washed with 3x 200 µl of 20 Mm NaH2PO4 followed by 5x 200 µl of 20 mM NaH2PO4/ 150 Mm NaCl (pH 7.0; SigmaAldrich, USA) to remove non-specific binding. The bound IgG was released from the Protein G-agarose by incubation in 100 µl of 100 mM HCl (SigmaAldrich, USA) for 5 min on RT. The supernatant containing released FF IgG was neutralised by addition of 20 µl of 500 mM NaOH (SigmaAldrich, USA). The isolated FF IgG and FF total protein concentrations were determined by using Qubit TM quantitation platform (Invitrogen, USA). To assess the purity of isolated FF IgG and measured concentrations of isolated IgG and FF total proteomes, the amounts of each sample corresponding to 3 µg of FF IgG and to 50 µg of FF total proteomes were subjected to 10% SDS-PAGE at 110V for 1.5 h (Supplementary Figure ).
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5

Hypothalamic Slice Preparation for Neuron Imaging

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The brain slices of hypothalamic arc region were obtained from POMC-EGFP, AgRP-Cre-Ai14, and DAT-Cre-Ai14 mice (postnatal age: 4–6 weeks). Mice were deeply anesthetized with isoflurane shortly before brain slicing. The brains were quickly shift into cold (4 °C), oxygenated (5% CO2, 95% O2) slicing medium containing 110 mM of choline chloride (Sigma-Aldrich), 2.5 mM of KCl (Sigma-Aldrich), 1.2 mM of NaH2PO4 (Sigma-Aldrich), 25 mM of NaHCO3 (Sigma-Aldrich), 20 mM of glucose (Sigma-Aldrich), 7 mM of MgCl2 (Sigma-Aldrich), and 0.5 mM of CaCl2 (Sigma-Aldrich). Coronal slices (150 μm) were cut using a vibratome. After slicing, the mice brain slices were transferred to a holding chamber filled with oxygenated (5% CO2, 95% O2) artificial CSF (ACSF) solution containing 124 mM of NaCl (Sigma-Aldrich), 2.5 mM of KCl, 1 mM of NaH2PO4, 26.2 mM of NaHCO3, 20 mM of glucose, 1.3 mM of MgCl2, and 2.5 mM of CaCl2. After at least one hour of recovery, individual slices were transferred to a recording chamber. Oxygenated ACSF continuously flew at a rate of 5 mL/min at 30–32 °C temperature.
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6

Antibody Conjugation for Fluorescent Probes

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The antibody components of the probes were concentrated to a minimum of 2 μg/μl using Amicon Ultra-15 Centrifugal Filter Units (Sigma-Aldrich). Succinimidyl 6-hydrazinonicotinate acetone hydrazine (SANH) Crosslinker (Solulink) was added at a 25-molar excess to the antibodies, and incubated under gentle agitation for 2 h at room temperature, protected from light. Each conjugation reaction underwent a buffer exchange to 100 mM NaH2PO4 (Sigma-Aldrich), 150 mM NaCl (Sigma-Aldrich), pH 6, with the use of Zeba Spin Desalting Columns, 7 K MWCO (Life Technologies), according to manufacturer’s instructions. Activated antibodies were incubated in 100 mM NaH2PO4 150 mM NaCl, pH 6 with a 3-molar excess of aldehyde-modified arm A (for anti-mouse IgG) or B (for anti-rabbit IgG) and 10 mM aniline (Sigma-Aldrich) as a catalyst. The reactions were incubated protected from light and with gentle agitation for 2.5 h in room temperature, before a buffer exchange to 1× PBS (Thermo Fischer Scientific), followed by size-exclusion purification.
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7

Hippocampal Slice Preparation for Electrophysiology

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Mice were briefly anesthetized with 3% sevoflurane before decapitation. Acute sagittal hippocampal slices (300 μm) were obtained using a VT1200S vibratome (Leica, Switzerland) in ice-cold dissection buffer (212 mM sucrose [Sigma-Aldrich, Cat# S5016], 25 mM NaHCO3 [Sigma-Aldrich, Cat# S6297], 5 mM KCl [Sigma-Aldrich, Cat# P3911], 1.25 mM NaH2PO4 [Sigma-Aldrich, Cat# S0751], 10 mM D-glucose [Sigma-Aldrich, Cat# G7578], 2 mM sodium pyruvate [Sigma-Aldrich, Cat# P2256], 1.2 mM sodium ascorbate [Sigma-Aldrich, Cat# A4034], 3.5 mM MgCl2 [Sigma-Aldrich, Cat# M0250], 0.5 mM CaCl2 [Sigma-Aldrich, Cat# C3881], continuously aerated with 95% O2/5% CO2). The slices were transferred to a chamber filled with warmed (32 °C) artificial cerebrospinal fluid (aCSF: 125 mM NaCl [Sigma-Aldrich, Cat# S7653], 25 mM NaHCO3, 2.5 mM KCl, 1.25 mM NaH2PO4, 10 mM D-glucose, 1.3 mM MgCl2, 2.5 mM CaCl2, aerated with 95% O2/5% CO2) for recovery (30 minutes), and then placed in room temperature prior to the experiments.
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8

Resorcinol Spectrophotometric pH Analysis

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All chemical reagents were of analytical grades and used as received without further purification: resorcinol (1,3-dihydroxybenzene, 99%, Sigma-Aldrich), hydrochloric acid (HCl, 37%, Sigma-Aldrich), sodium hydroxide (NaOH, ≥97.0%, Sigma-Aldrich), sodium phosphate dibasic (Na2HPO4, ≥99.0%, Sigma-Aldrich), sodium phosphate monobasic (NaH2PO4, ≥99.0%, Sigma-Aldrich), and potassium chloride (KCl, ≥99.0%, Sigma-Aldrich).
Buffer solutions were freshly prepared as follows: pH 1.0 – hydrochloric acid (HCl), pH 4.0 – citric acid/sodium citrate, pH 6.0 – sodium phosphate monobasic (NaH2PO4)/sodium phosphate dibasic (Na2HPO4), pH 9.0 – sodium carbonate (Na2CO3)/sodium bicarbonate (NaHCO3), pH 10.0 – sodium bicarbonate (NaHCO3) and sodium hydroxide (NaOH), pH 12.0, 13.0, 14.0 – sodium hydroxide (NaOH). The ionic strengths of all buffer solutions were adjusted to 0.10 M by the addition of potassium chloride (KCl).
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9

Preparation of Mouse Cerebellar Slices

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Slices were prepared from P17–P90 male CD1 EAAT4-GFP or EAAT4-GlyT2-GFP mice. This strain was obtained by crossing EAAT4-GFP mice with a line expressing GlyT2-GFP (gift from H.U. Zeilhofer) (Zeilhofer et al., 2005 (link)), in which some GoCs express GFP. Mice were anesthetized by inhalation of isoflurane, and then killed by decapitation. Transverse slices were prepared as previously described (Valera et al., 2012 (link)). The cerebellum was dissected out and placed in cold artificial cerebrospinal fluid (ACSF) bubbled with carbogen (95% O2, 5% CO2), containing (in mM): NaCl 120, KCl 3, NaHCO3 26, NaH2PO4 1.25, CaCl2 2.5, MgCl2 2, glucose 10 and minocycline 0.00005 (Sigma-Aldrich, USA). Then 300 µm-thick transverse slices were prepared (Microm HM 650V, Microm, Germany) in potassium-based medium, containing (in mM): K-gluconate 130, KCl 14.6, EGTA 2, HEPES 20, glucose 25, minocycline 0.00005 and D-AP5 0.05 (Sigma-Aldrich). After cutting, slices were soaked in a sucrose-based medium at 34°C, containing (in mM): sucrose 230, KCl 2.5, NaHCO3 26, NaH2PO4 1.25, glucose 25, CaCl2 0.8, MgCl2 8, and minocyclin 0.00005 (Sigma-Aldrich) and maintained in a water bath at 34°C in bubbled ACSF.
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10

Coronal Brain Slice Preparation

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Fourteen to 20 days (age range P40–P48) after the surgery, mice were decapitated under deep anesthesia (isoflurane) and brains were dissected in ice-cold choline chloride solution (110 mM choline chloride, 25 mM NaHCO3, 25 mM D-glucose, 11.6 mM sodium ascorbate, 7 mM MgCl2, 3.1 mM sodium pyruvate, 2.5 mM KCl, 1.25 mM NaH2PO4, and 0.5 mM CaCl[Sigma]; aerated with 95% O2/5% CO2) and sectioned in 300-μm-thick coronal slices using a Leica VT1200S vibratome. Slices were then incubated for 30 min at 37°C in artificial cerebrospinal fluid (127 mM NaCl, 25 mM NaHCO3, 25 mM D-glucose, 2.5 mM KCl, 1 mM MgCl2, 2 mM CaCl2, and 1.25 mM NaH2PO4 (Sigma); aerated with 95% O2/5% CO2).
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