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12 protocols using smifh2

1

Targeted Inhibition of Actin Dynamics in Lateral Amygdala

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The stylus was removed from the guide cannula, and a 28 gauge injection cannula, extending 1.5 mm from the tip of the guide cannula aimed to the LA, was carefully placed. The injection cannula was connected via PE20 tubing and back-filled with saline with a small air bubble separating the saline from the drug solution, to a 10-μl Hamilton microsyringe, driven by a microinjection pump (PHD 2000, Harvard Apparatus, Cambridge, MA). Solution was injected at a rate of 0.5 μl/min. Total volume injected was 0.5 μl per LA. CK-666 (100 µm; Tocris Bioscience, Bristol, UK), control compound CK-689 (100 µm; Merck Millipore, Billerica, MA) or SMIFH2 (100 µm; Tocris) were dissolved in vehicle (1:1 saline and DMSO). YGRKKRRQRRRGGPPPPPGPPPPPGPPPPP-Lys(biotyn)-NH2-OH [TAT-G(GP5)3] or control peptide [YGRKKRRQRRRGGAAAAAGAAAAAGAAAAA-Lys(biotyn)-NH2-OH; TAT-G(GA5)3] (GL Biochem, Shanghai, China) were first dissolved in DMSO and then diluted with saline, to 30 µg/µl. After injection, the injection cannula was left for an additional 1 min before withdrawal to minimize dragging of injected liquid along the injection track.
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2

Formin and Myosin II Inhibition Protocol

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For formin drug inhibition studies, cells were incubated with 20 or 40 μM SMIFH2 (4401, TOCRIS, UK) in serum containing DMEM for 1–2 h at 5% CO2, 37 °C. In in vitro experiments, SMIFH2 (340316-62-3, Sigma-Aldrich) was used at a concentration of 100 μM (see below). For myosin II inhibition studies, 30 μM or 50 μM Rho-kinase (ROCK) inhibitor Y-27632 (Y0503, Sigma-Aldrich), or 20 μM S-nitro-blebbistatin (13013-10, Cayman Chemicals) was added for 10–20 min before the experiments or directly during observation. All inhibitors remained in the medium during the entire observation period.
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3

Immunofluorescence Staining of Actin Regulators

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Primary antibodies used were rabbit anti-mDia1 polyclonal (LifeSpan BioSciences, Seattle, WA), rabbit anti-mDia3 polyclonal (SIGMA-Aldrich, St. Louis, MO), chicken anti-vimentin polyclonal (Millipore, Burlington, MA), rabbit anti-GFP polyclonal (MBL, Nagoya, Japan), goat anti-nectin-2 polyclonal (Santa Cruz Biotechnology, Dallas, TX), rabbit anti-espin1 polyclonal (#PB538, a gift from Dr. Bechara Kachar, NIH) [49 (link)], mouse anti-espin1 monoclonal, mouse anti-N-cadherin monoclonal (BD Bioscience, San Jose, CA), and mouse anti-phospho-myosin light chain2 (Ser19) monoclonal (Cell Signaling, Danvers, MA). Inhibitors used were SMIFH2 (Tocris, Bristol, United Kingdom) and CK-666 (Tocris, Bristol, UK).
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4

Actin Dynamics Regulation in Infection

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HeLa cells and Caco2 monolayers were treated with 50 µM CK666 + 50 µM CK869 (Calbiochem), 25 µM SMIFH2 (Tocris), 4 µM Wiskostatin (Sigma), or equivalent volumes of DMSO for 15 min prior to infection. During infections, media containing bacteria and inhibitors were added to HeLa cells and Caco2 monolayers, and the latter cells were washed with PBS and given fresh inhibitor-containing media every hour during the course of infection. NIH3T3 cells expressing mCherry-βactin [97 (link)] were infected 3.5–4.0 h prior to treatment with inhibitors, and live imaging was completed 15–120 min after the addition of the inhibitors.
RNA and DNA transfections were performed using RNAiMAX or Lippofectamine-LTX reagents (Invitrogen). To clone GFP-mDia1, mDia1 plasmid DNA (variant BC143413, Dharmacon) was PCR amplified as a Kpn1-Not1 fragment using primers ATCATCGGTACCATGGAGCCGCCCGGCGGGAG, and ATCATCGCGGCCGCTTATTAGCTTGCACGGCCAACCAACTC and ligated into the vector pKC-EGFP-C1 [97 (link)]. The plasmid was maintained in E. coli XL-1 Blue. For transient expression, 100 ng of GFP-mDia1 plasmid was transfected in 6-well plates. Sigma MISSION siRNAs (see S2 Table) were used at 40 nM for RNAi experiments. Targets were selected based on HeLa cell expression data cataloged on the Human Protein Atlas (https://www.proteinatlas.org/cell).
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5

Magnetic Bead Protocol with Inhibitors

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The superparamagnetic beads (Dynabeads M-450) were purchased from Invitrogen (Carlsbad, CA, USA). Dimethyl sulfoxide (DMSO) was purchased from Sigma-Aldrich (St. Louis, MO, USA); SMIFH2, (R)-(+)-blebbistatin, CK666, and LatA were purchased from Tocris Bioscience (Bristol, UK).
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6

Inhibition of Actin Regulators in Drosophila Embryos

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Following dechorionation as previously described, embryos were staged and aligned on apple juice agar, glued to a coverslip with heptane glue and desiccated. Embryos were covered with Halocarbon 700 oil then injected with 250 µM CK-666 (an Arp2/3 inhibitor, TOCRIS cat #3950) or 50 µM SMIFH2 (a Dia/Formin inhibitor, TOCRIS cat #4401). Embryos at early GBE were injected in the perivitelline space at 50% egg length.
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7

Multi-color Confocal Imaging of Actin Dynamics

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Alexa 647 (A647; 20–30 μM in bathing solution, Invitrogen) and Alexa 488 dyes (A488; 20–30 μM in bathing solution, Invitrogen) were excited by a solid-state 638 nm (30 mW output) and 488 nm lasers (20 mW output) with an inverted confocal microscope (TCS SP8, Leica, Germany; original magnification, × 63/1.40 oil objective). Unless mentioned otherwise, the 638 nm laser was set at 20–25% of the maximum power and the 488 nm laser was set at 0.5–2% of the maximum power. A647 fluorescence was collected with a photomultiplier at 639–767 nm, whereas A488 was collected with a hybrid GaAsP spectral detector at 489–596 nm. For time-lapse A647/A488 imaging, images were collected with 40 ms inter-frame interval at 45–70 nm per pixel in an imaging area of ∼160–320 μm2. In some experiments, cells were pre-treated with 3 μM latrunculin A (Enzo Life Sciences), 4 μM Cyto D (Enzo Life Sciences), wiskostatin (10 μM, Tocris Bioscience) and SMIFH2 (25 μM, Tocris Bioscience) for 20 min in the bath solution, or whole-cell dialysis of phalloidin–FITC (1.3 μM, Invitrogen) for 2–3 min before imaging.
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8

Melanocyte Melanosome Biogenesis and Secretion

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Cells were incubated with TIP (Sigma-Aldrich) at 5 µM for 30 min for live cell imaging or for 60 min at 25 µM for EM. To stimulate melanosome biogenesis and secretion, MNT-1 cells were incubated with 30 µM forskolin (Sigma-Aldrich) for 3 d. CK-666 and SMIFH2 (Tocris Biosciences) treatments were for 30 min at 50 µM. To inhibit myosin II activity, cells were incubated 60 min with 50 µM para-nitroblebbistatin (Optopharma; a gift from S. Miserey-Lenkei, Institut Curie, Paris, France). For the incubation with DAMP, cells were starved 30 min with serum-free medium (Opti-MEM; Thermo Fisher Scientific), incubated 30 min with 30 µM DAMP (Invitrogen) at 37°C, and then washed with cold medium before fixation.
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9

Inhibiting Cytoskeleton Dynamics in Starfish Oocytes

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For drug treatments, oocytes were transferred into plastic dishes (Ibidi #80131). To inhibit myosin II ATPase activity, oocytes were incubated with a final concentration of 300 µM Blebbistatin (Abcam) for at least 3 hr before starting maturation; with ML-7 (Tocris) and Y-27632 (Enzo Life Sciences) at a final concentration of 100 µM for 1 hr. To induce acute F-actin depolymerization, oocytes were first matured and then treated with Latrunculin A (Abcam) after NEBD, as NEBD is known to depend on actin polymerization in starfish oocytes (Mori et al., 2014 (link)). To inhibit formin FH2 activity, we incubated oocytes with SMIFH2 (Tocris) at a final concentration of 50 µM for at least 2 hr.
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10

Inhibitor-based pathway analysis protocol

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U0126 (cat #: 9903), Dactolisib (NVP-BEZ235; cat #: 13101), and Perifosine (cat #: 14240) were purchased from Cell Signaling Technology (Beverly, MA). Dasatinib (cat #: S1021), Saracatinib (cat #: S1006), and Defactinib (cat #: S7654) were purchased from Selleckchem (Houston, TX). CK-666 (cat #: 3950) and SMIFH2 (cat #: 4401) were purchased from Tocris Bioscience (Bristol, UK). To inhibit a pathway, a 1000× stock solution in dimethyl sulfoxide (DMSO; Sigma-Aldrich, St. Louis, MO) was diluted in 400 µL media and dissolved using a vortex mixer for 30 s before adding to wells containing 2 mL of media. For AFM analyses, cells were treated for 30 min prior. Treatments for fluorescence microscopy are as noted in each figure.
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