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Lipofectin reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Canada

Lipofectin reagent is a cationic lipid-based transfection reagent used for the delivery of nucleic acids, such as DNA and RNA, into eukaryotic cells. It facilitates the uptake of genetic material by the cells, enabling various applications in molecular biology and cell biology research.

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58 protocols using lipofectin reagent

1

Genetic Manipulation of CRC Cell Lines

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The human colorectal cancer (CRC) cell lines DLD1, HCT116, HT29, SW480 and SW1222 were obtained from the ATCC and cultured in Dulbecco's Modified Eagle's medium (DMEM) containing 5% fetal bovine serum (FBS). None of these CRC cell lines have mutations in either PAK1 or PAK2; DLD1 only has a missense mutation in PAK4 [27 (link)]. The PAK1 knockdown (KD) clones of HCT116 cells were generated by transfection with plasmid DNAs encoding either shRNA sequences (SABioscience, Frederick, MD) to silence the PAK1 gene specifically or with a scrambled sequence as a negative control using Lipofectin Reagent (Invitrogen, Melbourne, Australia) as described previously [15 (link)]. The constitutively active PAK1 constructs (generously provided by Dr. Gary Bokoch, The Scripps Research Institute, La Jolla, CA) were sub-cloned into the pCDNA3.1 vector (Invitrogen, Melbourne, Australia). CA PAK1 plasmid DNA was transfected into SW480 cells using Lipofectin Reagent (Invitrogen) as described previously [18 (link)].
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2

Stable Transfection of S2 Cells

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S2 cells were grown at 26 °C in Schneider’s Drosophila medium (Gibco), supplemented with 10% FBS. S2 cells were transfected using Lipofectin reagent (Invitrogen), according to the manufacturers’ recommendations. In brief, to obtain a stable clone, pAc–EGFP–Flag–SMARCAD1 or pAc–EGFP was co-transfected with pCoHygro (Invitrogen) using Lipofectin reagent. After 22 h of transfection, DNA-containing medium was replaced with selection medium supplemented with 10% FBS and 300 μg/mL HygroGold (InvivoGen).
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3

Recombinant Adenovirus Generation

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Monolayers of VIDO DT1 cells (2 × 105 cells/well) in 6-well plates were transfected with 5 µg circular plasmid DNAs by using Lipofectin reagent (Invitrogen, USA). After incubation at 37℃ for 7 to 15 days, the transfected cells showing cytopathic effects (CPE) were collected, freeze-thawed five times, and the recombinant viruses serially passaged for three generations to verify whether the recombinant BAdVs were rescued successfully.
To rescue pIX-deleted HAdV type 5 (HAdV5), the resulting plasmid pH5LRedΔpIX was linearized by PacI and transfected into 293A cells together with plasmid pH5R (PacI digested) containing a portion of the HAdV5 genome with a 1878 bp deletion in the E3 region by using Lipofectin reagent (Invitrogen) as per the manufacturer's instructions. Homologous recombination led to the generation of a recombinant virus, named HAdV5Δ pIX. To corroborate the deletion of the pIX region from HAdV5, the viral genome was extracted from 293A cells at 48 h post-infection and sequenced.
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4

RNAi Soaking Silencing Assay

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RNAi using the soaking protocol was performed on ~100 L 3 and L 4 worms. The worms were washed with PBS and soaked in 2% sodium hypochlorite for 15min. and washed again.
The parasites in a 30µl of PBS volume containing 1 mg/ml dsRNA pre-mixed with 3 µl of lipofectin reagent (Invitrogen) were stood at room temperature for 48 h. Larvae soaked in either PBS alone or lipofectin reagent without dsRNA served as the respective controls.
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5

Monoclonal Antibody-Based Protein Detection

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Monoclonal anti-panRas antibody (Ab-3) was purchased from Calbiochem (EMD Biosciences, an Affiliate of Merck KGaA, Darmstadt, Germany); The antibodies against Ki-Ras (sc-521), anti-ERK, phospho-ERK, anti-cyclin A, anti-p53, anti-cyclin D1, anti-p27 and anti-p53 were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The anti-β- actin was from Sigma–Aldrich (St. Louis, MO, USA). The peroxidase-conjugated (HRP) anti-rabbit, anti-mouse secondary antibodies, nitrocellulose membrane PROTRAN and the ECL detection system were from Amersham-Pharmacia (Biothec, UK Limited). Fetal bovine serum (FBS), trypsin–EDTA, and penicillin/streptomycin solutions were purchased from HyClone Europe Ltd. (Cramlington, UK); Dulbecco’s Modified Eagle’s Medium (DMEM) and Lipofectin reagent were from GIBCO BRL, Life Technologies (Carlsbad, CA, USA). All other reagents were purchased from Sigma Aldrich (Milano, Italy).
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6

Establishing IL-6 Transfected Lewis Lung Cancer Cells

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Lewis lung cancer (LLC) cells originated as a spontaneous carcinoma of the lung in a C57BL/6 mouse [17] (link), [18] (link). We established LLC cells transfected with the human IL-6 gene (LLC-IL6), which has a potent ability to induce cancer cachexia in mice, as previously described [12] (link). Briefly, human IL-6 cDNA was introduced into Sal I site of the eukaryotic cDNA expression vector BMGNeo, and was transfected into LLC cells using the Lipofectin reagent (Gibco BRL, Gaithersburg, MD) according to the manufacturer’s instructions [12] (link), [19] (link). Cells were maintained in Iscove’s Modified Dulbecco’s Medium (IMDM, Wako, Osaka, Japan) with 20% fetal bovine serum, penicillin and streptomycin (100 U/mL and 100 µg/mL, respectively).
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7

Gastric Cancer Cell Culture and Treatment Protocol

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Cell culture systems were performed as previously described (Wu et al. 2016b (link)). The cell bank of Taipei Veterans General Hospital (Taiwan) supplied the human gastric cancer cell lines, AGS (moderately differentiated gastric adenocarcinoma) and MKN 45 or SCM-1 cells (poorly differentiated gastric adenocarcinoma). Cells were grown in RPMI medium supplemented with 10% FBS, 100 U/ml penicillin, and 100 mg/ml streptomycin (complete medium) at 37 °C in a humidified incubator with 5% CO2. During experiments, cells were plated in six-well plates cultured with serum-free medium (starved medium) overnight and then treated with drugs (honokiol or melatonin) with various concentrations for various time intervals. In some experiments, transfection of cancer cells was performed using a Lipofectin reagent (Invitrogen) according to the manufacturer’s instructions. The efficiency of transfection (~ 90%) was determined using an equal amount of a plasmid that encoded the green fluorescent protein under the cytomegalovirus promoter.
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8

Transient Silencing of Fungal Genes

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Small interference RNAs (siRNA) design primers, preparation of fungal protoplast and siRNA delivery were performed according to Hanano et al. (2018a) (link). In brief, delivery of siRNA to protoplasts was done in sterile 1.5 mL tubes. A total of 10 μL of siRNA primer (100 nM) was mixed with an equal volume of Lipofectin reagent (Invitrogen Life Technologies, United Kingdom) and kept for 15 min at 20°C. A volume of 50 μL of protoplasts was added, gently mixed and incubated at 20°C for 24 h to allow transfection to proceed. The transfected protoplasts were therefore inoculated in 10 mL of PD medium with 1.2 M of sorbitol for 7 days at 28°C in the dark. All experiments were performed using three biological replicates.
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9

Transfection of Cancer Cell Lines

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Cancer cells AGS, SCM1, and MKN45 were transfected with shRNA (National RNAi Core Facility Platform, Taipei, Taiwan) or overexpressed plasmid 1 μg/ml pcDNA (Genome Research Center, National Yang-Ming University) using a Lipofectin reagent (Invitrogen), in accordance with the manufacturer’s instructions.
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10

Knocking Down pgc-1α Gene via siRNA

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Gene knockdown was conducted with small interfering RNA (siRNA) against the pgc-1α gene. Multiple siRNA sequences were synthesized form by GE Healthcare (GE Healthcare, Chicago, IL, USA). All siRNAs were dissolved in an isotonic RNAi buffer (100 mM potassium acetate; 30 mM Hepes-KOH; 2 mM magnesium acetate; 26 mM NaCl, pH 7.4, at 37 °C). The siRNA against pgc-1α as following blow:
pgc-1αSequenceSequence 15′-CGGUGGAUGAAGACGGAUU-3′Sequence 25′-CAAUGAAUGCAGCGGUCUU-3′Sequence 35′-GAACAAGACUAUUGAGCGA -3′Sequence 45′-AUUCAAACUCAGACGAUUU-3′Pooled siRNAs were mixed with Lipofectin reagent (1:1, 18292-011, Invitrogen, Carlsbad, CA, US) and microinjected bilaterally into the CA3 region of the hippocampus 24 h before the microinjected administration of KA. The pooled non-targeting siRNAs containing four scramble sequences were used as control siRNA.
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