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7 protocols using cd95 fitc

1

Isolation and Characterization of Naive T Cells

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After thawing, PBMCs were stained with CCR7 BV650 (Clone 3D12; BD Biosciences), CD95 FITC (Clone DX2; BD Biosciences), CD27 PE (Clone M-T271; BD Biosciences), CD8 APC (Clone RPA-T8; BD Biosciences), CD4 APC-Cy7 (Clone RPA-T4; BD Biosciences), CD45RA ECD (Clone IM271111; Beckman Coulter), CD57 PB (Clone HCD57; Biolegend), CD49d PeCY7 (Clone 9F10; Biolegend), and eFluor 506 for viability (Biolegend). Naive CD4+ and CD8+ T cells, defined as CD45RA+, CD27+ CCR7+, CD95, CD49d, were sorted on an ARIAIII (Becton Dickinson). DNA and RNA from sorted cells were extracted using AllPrep DNA/RNA Micro kit (Qiagen) according to manufacturer instruction.
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2

Phenotypic Characterization of Memory CD4 T Cells

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Isolated PBMC were labeled with a panel of CD3-Cy-7APC, CD4-APC, CD8-Alexa700, CD20-Pacific Blue, CD95-FITC and CD28-Cy-5PE (BD Biosciences) antibodies and analyzed using a BD LSR II instrument. Central memory CD4 T cells (CD3+CD20-CD4+CD28+CD95+) were sorted using a Becton Dickinson Aria sorter, and used for microarray analysis. Memory CD4 T cells was discriminated based on the expression of CD28 and CD95 as described previously[7 (link), 51 (link)]. After excluding dead cells, live CM cell subsets that were sufficient to yield a minimum of ~1 ug of RNA were sorted (>95% purity) and used for RNA extraction.
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3

FAS Expression Quantification in CERS6 Cells

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FAS expression levels were determined in CERS6 knockdown and overexpressing CCRF-CEM cells by flow cytometry using CD95-FITC and FITC Mouse Anti-human IgG (both from BD Biosciences, San Jose, CA) as described previously30 (link). Briefly, cells at logarithmic growth phase were washed twice with PBS, and resuspended in 100 μl of binding buffer (BD Biosciences) at a final concentration of 0.5 × 106 cells per 50 μl. Either anti-human IgG-FITC or CD95-FITC (20 μl per sample) was added to the cell suspension, and the mixure was indubated for 10 min at room temperature. The cells were washed and resuspended in 390 μl of binding buffer. The cells were analyzed by flow cytometry (BD LSR II operated by FACS DIVA) with band-pass filters of 525 ± 25 mm.
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4

Immunophenotyping of T-cell Subsets in HIV Infection

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Lymphocyte surface phenotypes were evaluated by flow cytometry on fresh peripheral blood of HIV-infected women alone, using fluorochrome-labeled antibodies: L/D-BV510 (Miltenyi Biotech, Germany); CD4-APC-H7, CD8-PE-Cy7, CD38-PE, CD45R0-PerCPCy5.5, CD45RA-PerCPCy5.5, CD127-APC, CD31-FITC, CCR7-APC, CD103-PE, CD95-FITC, CD69-FITC, PD1-PE (BD Biosciences, Palo Alto, CA).
T-cell subsets were defined as: naive CCR7+ CD45RA+, central memory CCR7+CD45RA, effector memory CCR7 CD45RA, and terminally differentiated CCR7 CD45RA+ subsets. Besides, we measured: activation (CD45R0/CD38/CD69), apoptosis (CD95), exhaustion (PD-1), IL7R (CD127), and Recent Thymic Emigrants (CD31 or CD103) on both CD4 and CD8 T-cell subsets.
Briefly, 1 × 106 peripheral blood mononuclear Cells were stained with the appropriate antibodies for 20 minutes at 4°C in the dark, washed and then acquired using FACSVerse cytometer (BD Biosciences, Palo Alto, CA).
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5

Flow Cytometric Analysis of T Cell Subsets

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Whole blood was stained for flow cytometry as previously described (38 (link), 68 (link)). mAbs used were as follows: CD3- FITC (clone SP34) or CD3-PerCP (clone SP34-2); CD20-PE (clone 2H7); CD8-PErCP (clone SK1) or CD8-PE (clone RPA-T8); CD4-APC (clone L200) or CD4-PerCP (clone L200); HLA-DR-PerCP (clone L243); CD95-FITC (clone DX2) or CD95-APC (clone DX2); CD28-APC (clone CD28.2) or CD28-PE (clone CD28); Ki-67–FITC (clone B56); CD25-FITC (anti–IL-2 receptor) (clone 2A3); and FoxP3–Alexa Fluor 488 (clone 259D.C7) (all from BD Biosciences). All Abs were validated and titrated using AGM PBMCs. Data were acquired with an LSR II flow cytometer (BD Biosciences) and analyzed with CellQuest software (BD Biosciences). CD4+ and CD8+ T cell percentages were obtained by first gating on lymphocytes and then on CD3+ T cells. Memory, activation, and proliferation markers were determined by gating on lymphocytes, then on CD3+ T cells, and finally on CD4+CD3+ or CD8+CD3+ T cells. Gating strategy for Tregs is presented in Supplemental Figure 6, while the gating strategy for macrophages is presented in Supplemental Figure 7.
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6

FACS Analysis of Accessory Molecules on RAW264.7 Cells

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The detection of accessory molecule expression on RAW264.7 cells by FACS analysis was performed as follows. Briefly, RAW264.7 cells were harvested by accutase or EDTA dissociation buffer and washed with FACS buffer (3% bovine serum albumin (BSA) and 0.1% sodium azide in DPBS). The cells were stained with the optimal concentrations of fluorochrome-conjugated antibodies for 30 min. The antibodies used in these experiments were Fas ligand-APC (eBioscience, San Diego, CA), CD95-FITC (BD Pharmingen, San Diego, CA), and F4/80-FITC (clone: BM8; BioLegend, San Diego, CA). One hundred thousand cells per treatment were acquired and analyzed using a BD FACSVerse flow cytometer and FlowJo software (version 10.7, BD Ashland, OR). Cells were gated using forward scatter vs. sideward scatter properties to exclude debris and doublets. The mean fluorescence intensity (MFI) of the whole macrophage population was analyzed.
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7

Multiparameter Flow Cytometry Immunophenotyping

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For surface staining, peripheral blood mononuclear cells (PBMCs) were incubated with directly conjugated mAbs for 30 min at 4 °C and then washed before analysis. Antibodies used were anti-human CD3-BV786 or CD3-APC, CD4-BV711, CD8-APC-H7, CD45RA-AF700, CD95-FITC, CD25 BV510, CD73 PE-CY7, CD11b AF700, CD45 BV786, CD14 BV711, CD56-PE-CF594, CD19-FITC, HLA-DR-PE, CD160-AF488 (BD Biosciences, San Diego, CA, USA), CCR7-BV421, PD-1-PE, 2B4-APC (BioLegend, San Diego, CA, USA), TIGIT-APC (Ebioscience, San Diego, CA, USA), LAG-3-AF700 (R&D Systems, Minneapolis, MN, USA) antibodies, and corresponding isotype controls. Data acquisition was performed on a LSR Fortessa flow cytometer (BD Biosciences), and data analysis was performed using FlowJo Software (Tree Star, Ashland, OR, USA).
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