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Cryojet

Manufactured by Oxford Instruments
Sourced in United Kingdom

The Cryojet is a specialized lab equipment for cooling and maintaining low temperatures. It provides a controlled and stable cryogenic environment for various applications in research and testing. The core function of the Cryojet is to enable precise temperature regulation and stabilization.

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19 protocols using cryojet

1

Single Crystal Structure Determination

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The single crystals
of [1]Cl and [2]AuCl4 were obtained by slow evaporation
of ether into a saturated DCM/MeOH (5:1) solution of [1]Cl and [2]AuCl4. All reflection intensities were measured at 110(2) K using
a SuperNova diffractometer (equipped with Atlas detector) with either
Mo Kα radiation (λ = 0.71073 Å) for [2]AuCl4 or Cu Kα radiation (λ = 1.54178 Å)
for [1]Cl under the program CrysAlisPro (version CrysAlisPro 1.171.39.29c,
Rigaku OD, 2017). The same program was used to refine the cell dimensions
and for data reduction. The two structures were solved with the program
SHELXS-2014/7 (Sheldrick, 2015) and were refined on F2 with SHELXL-2014/7 (Sheldrick, 2015).
For [1]Cl, Analytical numeric absorption correction using a multifaceted
crystal model was applied using CrysAlisPro. For [2]AuCl4, numerical
absorption correction based on Gaussian integration over a multifaceted
crystal model was applied using CrysAlisPro. The temperature of the
data collection was controlled using the system Cryojet (manufactured
by Oxford Instruments). The CCDC deposition numbers of [1]Cl and [2]AuCl4 are 2043618 and 2043617, respectively.
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2

Single Crystal X-ray Diffraction Structural Analysis

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The intensities were measured at 110(2) K using a SuperNova diffractometer (equipped with Atlas detector) with Cu Kα radiation (λ=1.54178 Å) for I and Mo Kα radiation (λ=0.71073 Å) for II. The program CrysAlisPro (Versions 1.171.36.32 Agilent Technologies, 2013 or 1.171.39.29c, Rigaku OD, 2017) was used to refine the cell dimensions and for data reduction. The structures were solved with the program SHELXS‐9722 and were refined on F2 with SHELXL‐2014/7.23 An analytical numeric absorption correction using a multifaceted crystal model or a numerical absorption correction based on Gaussian integration over a multifaceted crystal model was applied using CrysAlisPro. The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). The H atoms were placed at calculated positions using the instructions AFIX 23, AFIX 43, AFIX 93 or AFIX 137 with isotropic displacement parameters having values 1.2 or 1.5 Ueq of the attached C atoms. The crystal data refinement parameters are summarized in Table 1. Displacement ellipsoidal plots and crystal packing figures were made using the programs PLATON24 and MERCURY,25 respectively.
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3

Single-crystal X-ray Structure Determination

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All reflection intensities were measured at 110(2) K using a SuperNova diffractometer (equipped with Atlas detector) with CuKα radiation (λ = 1.54178 Å) under the program CrysAlisPro.53 The same program was used to refine the cell dimensions and for the data reduction. The structure was solved with the program SHELXS-2014/7 (ref. 54 (link)) and was refined on F2 with SHELXL-2014/7.55 (link) Analytical numeric absorption correction using a multifaceted crystal model was applied using CrysAlisPro. The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). The H atoms were placed at calculated positions using riding model the structure is disordered.
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4

Single Crystal X-ray Structure Analysis

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All reflection intensities were measured at 110(2) K using a SuperNova diffractometer (equipped with Atlas detector) with Cu Kα radiation (λ = 1.54178 Å) under the program CrysAlisPro (Version CrysAlisPro 1.171.39.29c, Rigaku OD, 2017)59 (link) The same program was used to refine the cell dimensions and for data reduction. The structure was solved with the program SHELXS-2018/3 (Sheldrick, 2018) and was refined on F2 with SHELXL-2018/3 (Sheldrick, 2018). Analytical numeric absorption correction using a multifaceted crystal model was applied using CrysAlisPro. The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). The H atoms were placed at calculated positions (unless otherwise specified) using the instructions AFIX 43 with isotropic displacement parameters having values 1.2 Ueq. of the attached C atoms. The H atoms attached to N1, O1W and O2W were found from difference Fourier maps, and their coordinates were refined pseudo freely using the DFIX instruction to keep the N–H, O–H and H⋯H distances within acceptable ranges. The structure is ordered.
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5

Structural Characterization of Organometallic Complexes

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Reflection intensities were measured at 110(2) K for PV(MeOP8Cz)(OMe)2 and [(TBP8CzH3)(H)]+[BArF] or 93(2) K for MnIII(MeOP8Cz)-(HOMe) using a SuperNova diffractometer (equipped with Atlas detector) with Cu Kα radiation (λ = 1.541 78 Å) under the program CrysAlisPro (Version 1.171.36.32 Agilent Technologies, 2013). The same program was used to refine the cell dimensions and for data reduction. The structure was solved with the program SHELXS-2013 and was refined on F2 with SHELXL-2013.51 Analytical numeric absorption correction based on a multifaceted crystal model was applied using CrysAlisPro. The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). The H atoms were placed at calculated positions using the instructions AFIX 43 or AFIX 137 with isotropic displacement parameters having values 1.2 or 1.5 Ueq of the attached C atoms.
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6

Structural Analysis of Vamorolone

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All reflection intensities were measured at 110(2) K using a SuperNova diffractometer (equipped with Atlas detector) with Cu Kα radiation (λ = 1.54178 Å) under the program CrysAlisPro (Version 1.171.36.32 Agilent Technologies, 2013). The same program was used to refine the cell dimensions and for data reduction. The structure was solved with computer programs CrysAlis PRO, Agilent Technologies, Version 1.171.36.32 (release 02-08-2013 CrysAlis171.NET) (compiled Aug 2, 2013, 16:46:58), SHELXS2014/7, SHELXL2014/7, and SHELXTL v6.10 [25 (link)].
Analytical numeric absorption correction using a multifaceted crystal model was applied using CrysAlisPro. The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). The H atoms were placed at calculated positions using the instructions AFIX 13, AFIX 23, AFIX 43, AFIX 137 or AFIX 147 with isotropic displacement parameters having values 1.2 or 1.5 Ueq of the attached C or O atoms.
The structural coordinates of the X-ray crystal structure of vamorolone have been deposited in the Cambridge Crystallographic Data Centre, deposition number CCDC 1557034.
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7

Single Crystal X-ray Diffraction of Et-Re-P-Br

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Diffraction data were collected at 110 K on an Oxford Diffraction SuperNova diffractometer with MoKα radiation (λ=0.71073 Å) using a EOS CCD camera. The crystal of EtRePBr was cooled with an Oxford Instruments Cryojet. Diffractometer control, data collection, initial unit cell determination, frame integration and unit-cell refinement was carried out with “CrysAlisPro”.[30 ] Face-indexed absorption corrections were applied using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.[31 ] OLEX2[32 ] was used for overall structure solution, refinement and preparation of computer graphics and publication data. Within OLEX2, the algorithm used for structure solution was “charge-flipping” using the superflip program.[33 ] Refinement by full-matrix least-squares used the SHELXL-97[34 ] algorithm within OLEX2.[32 ] All non-hydrogen atoms were refined anisotropically. Hydrogen atoms were placed using a “riding model” and included in the refinement at calculated positions. Crystal data and structure refinement details (see the Supporting Information, Table S4), selected bond distances and angles (Table S5) and details about the X-ray crystal structure refinement are given in the Supporting Information.
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8

Cryo-SRXRF Imaging of Neuronal Elements

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The equipment required for SRXRF analysis is available as part of the general user facility at the Advanced Photon Source (APS, Argonne National Laboratory, Argonne, IL) beamline 2-ID-D. Upon mounting onto a custom holder in a liquid nitrogen bath, the neuron-containing SiN window was quickly placed in the center of a Cryojet (Oxford Instruments) that convectively cooled the sample with cold nitrogen gas maintained at 100°K. To prevent frosting of the sample, the cold nitrogen jet was surrounded by a dry nitrogen jet at ambient temperature placed inside a chamber with a continuous flow of dry nitrogen. A monochromatic X-ray beam was focused on the specimen using a Fresnel zone plate. Energy of the incident X-ray beam was 10 keV allowing excitation of zinc, potassium, sulfur, and other transition elements. A scan area containing neurons of interest was located by the coordinates obtained from the observation in cryo light microscope and further defined by a coarse 2-D scan viewed using the MAPS software (see below). A final high resolution scan was performed with a pixel step size of 0.25 μm and a 250 msec dwell time.
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9

X-ray Structural Determination of D-U Hydrate

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To obtain single crystals of D-U hyd, 15 mg of a dry ground equimolar mixture of D and U was dissolved in 5 mL of methanol. Single-crystals were grown after solvent evaporation at room temperature. Single crystal measurements were performed on an Oxford Diffraction Xcalibur Nova R (microfocus Cu tube) equipped with an Oxford Instruments CryoJet liquid nitrogen cooling device. Program package CrysAlisPRO70 was used for data reduction and numerical absorption correction. The structures was solved using SHELXS97 and refined with SHELXL-2017.77 The model was refined using the full-matrix least-squares refinement; all non-hydrogen atoms were refined anisotropically. Hydrogen atoms were located in a difference Fourier map and refined as a mixture of free-restrained and riding entities. The co-crystallized water molecule (O3) is disordered over two positions (designated as A and B) with respective occupancies of 63% and 37%. Molecular geometry calculations were performed by PLATON71 (link) and molecular graphics were prepared using ORTEP-3,72 and Mercury.73 (link) Crystallographic and refinement data for D-U hyd is shown in Figure S15. The structure has been deposited in the Cambridge Crystallographic Data Center (CCDC) as no. 2059340.
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10

Crystal Structure Determination Protocol

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For all structures, reflection intensities were measured at 110(2) K using a SuperNova diffractometer (equipped with Atlas detector) Cu Kα radiation (λ = 1.54178 Å) under the program CrysAlisPro (Version 1.171.39.29c, Rigaku OD, 2017). The same program was used to refine the cell dimensions and for data reduction. The structures were solved with the program SHELXS-2014/7 and refined on F2 (link) with SHELXL-2014/7.45 (link) The temperature of the data collection was controlled using the system Cryojet (manufactured by Oxford Instruments). An analytical numeric absorption correction method was used involving a multifaceted crystal model based on expressions derived elsewhere.46
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